PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G173100.1.p | ||||||||
Common Name | GLYMA_03G173100, LOC100806997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 19475.5 Da PI: 9.7669 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00093 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Glyma.03G173100.1.p 41 FECKTCNRKFSSFQALGGHRASH 63 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Glyma.03G173100.1.p 89 HECSICGQEFSLGQALGGHMRRH 111 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.19 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.1E-8 | 41 | 111 | No hit | No description |
PROSITE profile | PS50157 | 10.408 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-10 | 41 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 87 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.079 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 89 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-9 | 89 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MKRQRDFEGF ESIDLANCLM MLSHPQQNKK LLQTKIEAVK FECKTCNRKF SSFQALGGHR 60 ASHKRSKLEG DELKAHAISL SLGNKPKMHE CSICGQEFSL GQALGGHMRR HRTTINEDFS 120 SIKQVITQVP DLKRSNSTRV IMCLDLNLTP FENDLKLLFG KMAPNSGALV DSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.57484 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G173100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095921 | 0.0 | BT095921.1 Soybean clone JCVI-FLGm-15C20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003521347.1 | 1e-126 | zinc finger protein ZAT11 | ||||
Refseq | XP_028225724.1 | 1e-126 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-46 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A445LE22 | 1e-124 | A0A445LE22_GLYSO; Zinc finger protein ZAT11 | ||||
TrEMBL | I1JPE3 | 1e-124 | I1JPE3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G33050.1 | 1e-125 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 9e-49 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G173100.1.p |
Entrez Gene | 100806997 |