PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 243aa MW: 27302.5 Da PI: 5.4756

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G162700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	107	156	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+ + +g Glyma.03G162700.1.p 107 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 156 9*****.******44465..********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.721	106	164	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-21	106	165	IPR016177	DNA-binding domain
SMART	SM00380	8.6E-35	106	170	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-29	106	165	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-12	107	156	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	107	118	IPR001471	AP2/ERF domain
CDD	cd00018	4.97E-19	107	165	No hit	No description
PRINTS	PR00367	2.2E-10	130	146	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDLDFDSTFF LNQNLSFFPE NSSIFGDTFS WDYNFVLDDI FNNLSDNSSQ SQTKETSSAS 60 NVSSCIGSVE LQEVSSNTTY KEVKKVRPPP PSPPLPSQQV AKEPRMYRGV RKRPWGKFAA 120 EIRDSTRNGV RVWIGTFDTA EAAALAYDQA AFSTRGSLAV LNFPEEVVRE SLKDMPSKPW 180 EEGSSPVLAL KRKHTMRTKS NSKKKTKVDQ REQLDFSRTS QNVLVFEDLG AEYLEQLLTL 240 TS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-28	97	166	5	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G162700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520600.1	1e-179	ethylene-responsive transcription factor 15
Refseq	XP_028225581.1	1e-179	ethylene-responsive transcription factor 15-like
Swissprot	Q8VYM0	6e-54	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	A0A445LCA0	1e-177	A0A445LCA0_GLYSO; Ethylene-responsive transcription factor 15
TrEMBL	I1JP31	1e-177	I1JP31_SOYBN; Uncharacterized protein
STRING	GLYMA03G31940.1	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF311	33	199
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	7e-47	ethylene-responsive element binding factor 15

Link Out ? help Back to Top
Phytozome	Glyma.03G162700.1.p
Entrez Gene	100779524

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]