PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 154aa MW: 16861.3 Da PI: 5.7679

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G162600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.2	2.3e-19	18	69	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r++lg+f+tae+Aa+a++aa+ ++g+ Glyma.03G162600.1.p 18 RYRGIRRRP-WGKFAAEIRDPTRK--GARIWLGTFDTAEQAARAYDAAAFHFRGH 69 69*****.******8542..4*********************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.83E-20	18	77	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.5E-32	18	78	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-36	18	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.554	18	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-23	18	77	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-13	18	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEGGRGVVNG NPSNADVRYR GIRRRPWGKF AAEIRDPTRK GARIWLGTFD TAEQAARAYD 60 AAAFHFRGHK AILNFPNEYG NVTPNPNNNY SSTSLPLPLL SSSSSSSSSF PSYYGEGSSQ 120 QQQGNDDDTF ELECLDNKLL EELLQQAPDR SGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-29	2	79	3	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G162600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	2e-92	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520599.1	1e-110	ethylene-responsive transcription factor ERF098
Refseq	XP_028223816.1	1e-110	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	5e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A445LCD6	1e-109	A0A445LCD6_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBL	I1JP30	1e-109	I1JP30_SOYBN; Uncharacterized protein
STRING	GLYMA03G31930.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-26	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G162600.1.p
Entrez Gene	100778998

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]