PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 232aa MW: 25700.9 Da PI: 7.3431

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G162500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.8e-16	87	132	3	51
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 y+GVr ++ +g+++AeIrdp+ ng r+++g+f +aeeAa a+++a+ Glyma.03G162500.1.p 87 YRGVRSRP-WGKFAAEIRDPTRNG--VRVWIGTFVSAEEAALAYDQAAF 132 9**999.******98887..*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-31	86	150	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-27	86	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-20	86	145	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.325	86	144	IPR001471	AP2/ERF domain
CDD	cd00018	2.70E-26	87	143	No hit	No description
Pfam	PF00847	2.7E-10	87	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	87	98	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	110	126	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDFNSSLFSC QSLESHLNSW EELFSFNNLP LNATNESSLD SKSSSSNEGI MESQEITSNI 60 TCDGHVEEKY SPPPSLLDGS KREKRTYRGV RSRPWGKFAA EIRDPTRNGV RVWIGTFVSA 120 EEAALAYDQA AFLTRGVLAT LNFSVQVVME SLQDMGFKAL KNDLSPVLAL KRMHVTRTKS 180 RASRSGNKKV KRACGSNGKW DTSTQNLLVL EDLGPEYLDQ LLSFTCPGSW C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-26	85	147	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00286	DAP	Transfer from AT2G31230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G162500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269\|PubMed:11950980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095843	0.0	BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241445.1	1e-172	ethylene-responsive transcription factor 15-like
Refseq	XP_028225580.1	1e-172	ethylene-responsive transcription factor 15-like
Swissprot	Q8VYM0	9e-44	ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBL	C6TE23	1e-171	C6TE23_SOYBN; Uncharacterized protein
STRING	GLYMA03G31920.1	1e-172	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF311	33	199
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	6e-36	ethylene-responsive element binding factor 15

Link Out ? help Back to Top
Phytozome	Glyma.03G162500.1.p
Entrez Gene	100818907

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang H, et al. Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea. Front Plant Sci, 2015. 6: p. 686 [PMID:26388886]