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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G162400.1.p | ||||||||
Common Name | GLYMA_03G162400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 103aa MW: 11268.6 Da PI: 5.5683 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.2e-11 | 17 | 45 | 27 | 55 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55 + +r++lg+f taeeAa+a+++a+ +++g Glyma.03G162400.1.p 17 HGARVWLGTFNTAEEAARAYDRAAFEMRG 45 349************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.907 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.37E-20 | 11 | 54 | No hit | No description |
SMART | SM00380 | 1.2E-13 | 12 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 17 | 54 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-13 | 17 | 54 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-8 | 18 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MKGNQSKLSI EEYVGGHGAR VWLGTFNTAE EAARAYDRAA FEMRGTMAIL NFPNEHPPCN 60 VASLSKKSSS SNTELGKQVV VFQCLDHKLL EEILDCDGEN HQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 17 | 56 | 36 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G162400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 3e-37 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028223675.1 | 2e-70 | ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | Q9LTC5 | 1e-21 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | K7KFF0 | 2e-71 | K7KFF0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G31912.1 | 3e-72 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G162400.1.p |
Publications ? help Back to Top | |||
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