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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G159700.2.p | ||||||||
Common Name | GLYMA_03G159700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 342aa MW: 38297.4 Da PI: 9.97 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 272 | 330 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ e+p+++++tYeg+Hnh+k Glyma.03G159700.2.p 272 DDYSWRKYGQKPIKGSPHPRGYYKCSSTrGCPARKHVERCLEEPSMLIVTYEGDHNHPK 330 99************************999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.1E-16 | 223 | 268 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 257 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.205 | 265 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-27 | 268 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-38 | 270 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-27 | 272 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEDVEEANRA AVESCHRVLS MMSQPGNEVH CRNLMVETGG AIVRFKKVVS LLSSGLGHAR 60 VRKHKKLQIP FSENILLDNQ ICKTDHHSKC LQFPHTIFTE NSVQGLGQTV RNSIYMMGNP 120 SLELSSNERS PLNLTRQTSA THYHFLQQQQ MKHQAEMMFR RNNSVVNLNF DSSSCTPSMS 180 SSTRSFISSL SIDGSVANMD GNGSAFHLLG AAHSSYQNSQ QQKRKCSARG DEGSVKCGSS 240 ARCHCSKKRK HRVKRSVKVP ATSNKLADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSTR 300 GCPARKHVER CLEEPSMLIV TYEGDHNHPK LQHNPQIREL H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-20 | 263 | 328 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12782 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G159700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235330 | 0.0 | AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014629302.1 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-113 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A445LCH7 | 0.0 | A0A445LCH7_GLYSO; Putative WRKY transcription factor 21 isoform A | ||||
TrEMBL | I1JP03 | 0.0 | I1JP03_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G31630.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-85 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G159700.2.p |