PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G157300.1.p
Common NameGLYMA_03G157300, LOC100811798
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 387aa    MW: 44541.5 Da    PI: 5.0837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34501412102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+ +ed+++++++sw++ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Glyma.03G157300.1.p  50 FLTKTYDAVEDPTTSHMVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHR 130
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll +i+r+k+
  Glyma.03G157300.1.p 131 HLLANIRRRKQ 141
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-5846139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-3846139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-3546139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3150139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-195073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-19101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNYLYPVKEE YLEWPPPSSS PPTTGGVDES AMVPPPRPMG GLHEIGPPPF LTKTYDAVED  60
PTTSHMVSWN RGGASFVVWD PHAFSRDLLP RYFKHNNFSS FVRQLNTYGF RKIDPDRWEF  120
ANEGFLRGHR HLLANIRRRK QPSSQPSSSS SSSSYYYYSS SSQQAQQGHC VEVGRFGLDE  180
EIDRLRRDKH VLMMELVKLR QQQQNTRSYL QAMEERLRGT EIKQQQMMAF LARALKNPTF  240
IQQLLQQKEK RKELEEAMSK KRRRPIERGP NHGVVGEESS SVKVESLVFG DEYGFGVSEL  300
EVLAMEMQGY GKGRREQEEE PDEALDQSQE RLEKELDEGF WEELFSEGFE GELDTNPTNS  360
QDQDEEEEDH VNVLANRFGY LGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-244813918120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249263KRKELEEAMSKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302040.0leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-98AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576917.10.0heat stress transcription factor A-7a
RefseqXP_028225531.10.0heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A445LCS20.0A0A445LCS2_GLYSO; Heat stress transcription factor A-6b isoform A
TrEMBLK7KFB60.0K7KFB6_SOYBN; Uncharacterized protein
STRINGGLYMA03G31381.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-104heat shock transcription factor A6B