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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G135800.1.p | ||||||||
Common Name | GLYMA_03G135800, LOC100802739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 232aa MW: 26714.2 Da PI: 8.8961 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.1 | 6.8e-34 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y +++d+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++ weF ++ Fkkg++ Glyma.03G135800.1.p 21 FLLKTYMLVDDPATDDVVSWNSEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR---------WEFFNDRFKKGER 101 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 ell++i+r+k Glyma.03G135800.1.p 102 ELLHEIRRRKA 112 ********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.13E-32 | 17 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-50 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.1E-35 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.0E-19 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-30 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-19 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-19 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEGTSEKGLW ECGRKCTPPP FLLKTYMLVD DPATDDVVSW NSEGTAFVVW QPAEFARDLL 60 PTLFKHSNFS SFVRQLNTYG FRKIATSRWE FFNDRFKKGE RELLHEIRRR KAWTSKQQPK 120 APNQATLQDS DEDQRSSSIS SSSGYTTLVD ENKRLKKENG VLNSELTSMK RKCKELLDLV 180 AKYSSHAKEE KEDERPMLFG VRLDVQGERE MKRHRAEMSE SASIMLSQSC K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-20 | 19 | 110 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-20 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-20 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-20 | 19 | 110 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62298 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G135800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098791 | 0.0 | BT098791.1 Soybean clone JCVI-FLGm-16B16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340353.1 | 1e-173 | heat stress transcription factor 6 | ||||
Refseq | XP_028225285.1 | 1e-173 | heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 1e-67 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A445LBQ3 | 1e-172 | A0A445LBQ3_GLYSO; Heat stress transcription factor B-3 | ||||
TrEMBL | I1JNB9 | 1e-172 | I1JNB9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29190.1 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 3e-66 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G135800.1.p |
Entrez Gene | 100802739 |