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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G126100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27962.4 Da PI: 8.5296 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.3e-13 | 74 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L Glyma.03G126100.1.p 74 KNHKEAEKRRRERINSHLDQLRTLLPCN-----SKTDKASLLAKVVQRVKEL 120 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.828 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-11 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.45E-12 | 74 | 123 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-14 | 75 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-14 | 75 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-12 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.9E-4 | 164 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MHHFAFAMDN SHLLQFLPNT TTSTNNTPFF HHAPPHTHST FSTNSSNNTS SYPFHLSQIT 60 ETPSHHDRAL AAMKNHKEAE KRRRERINSH LDQLRTLLPC NSKTDKASLL AKVVQRVKEL 120 KQQTSEITEL ETVPSETDEI TVLATTGGDY ASGGDDGRLI FKASLCCEDR SDLIPDLIEI 180 LNSLHLKTLK AEMATLGGRT RNVLIVAADK EHSIESIHFL QNSLKSLLDR SSSGDRSKRR 240 RGLDRRLMS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22304 | 0.0 | meristem| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G126100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520487.1 | 0.0 | transcription factor bHLH106 | ||||
Refseq | XP_028225181.1 | 0.0 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-75 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0R0KI95 | 0.0 | A0A0R0KI95_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LAQ0 | 0.0 | A0A445LAQ0_GLYSO; Transcription factor bHLH106 | ||||
STRING | GLYMA03G28150.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 5e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G126100.1.p |
Publications ? help Back to Top | |||
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