PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G117500.2.p
Common NameGLYMA_03G117500, LOC100802206
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 337aa    MW: 37076.7 Da    PI: 8.8139
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G117500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-41196273178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  Glyma.03G117500.2.p 196 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 273
                          6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-35190258IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376194271IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-38195275IPR004333Transcription factor, SBP-box
PfamPF031103.2E-31197270IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLDYEWGNPS TIMLSGNEDS SAAGSDQTHR QIFDHYASHT LIPDHFLHAP THSTATTAAA  60
ATVDFTHHHH FTPQPHHHNQ NHMNHHHHHA FFDPRAFHGA SNTSYPPPHS MLSLDPLPHV  120
NAVGPGHGPG SGPGGLLLVP KSEDVGRPMD FVGSRIGLNL GGRTYFSSSE DDFVSRLYRR  180
SRPVEPGSTA SSNSPRCQAE GCNADLSQAK HYHRRHKVCE FHSKAATVIA AGLTQRFCQQ  240
CSRFHLLSEF DNGKRSCRKR LADHNRRRRK TQQPTQEIQK SQSSLENVAR SPPDSGAQSS  300
SSVTVAVSPP DYFRQRPYQS TNPSSTTSSS LFFSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32187270184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.446990.0flower| leaf| pod| vegetative bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G117500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521087.10.0squamosa promoter-binding-like protein 8
RefseqXP_028225092.10.0squamosa promoter-binding-like protein 8
TrEMBLA0A445LAF90.0A0A445LAF9_GLYSO; Squamosa promoter-binding-like protein 8
TrEMBLI1JMV90.0I1JMV9_SOYBN; Uncharacterized protein
STRINGGLYMA03G27180.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.17e-76squamosa promoter binding protein-like 8