PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34415.2 Da PI: 6.8671

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G114300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	147	201	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F++++ ++ ++++ LAk+l+L rqV vWFqNrRa+ k Glyma.03G114300.1.p 147 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 201 788899***********************************************98 PP
2	HD-ZIP_I/II	124.1	6.6e-40	147	236	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e++ L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr + Glyma.03G114300.1.p 147 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELR-A 235 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.03G114300.1.p 236 L 236 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.1E-31	1	112	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	1.2E-18	120	204	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-18	129	204	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.475	143	203	IPR001356	Homeobox domain
SMART	SM00389	4.9E-16	145	207	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-16	147	201	IPR001356	Homeobox domain
CDD	cd00086	3.77E-15	147	204	No hit	No description
PROSITE pattern	PS00027	0	178	201	IPR017970	Homeobox, conserved site
SMART	SM00340	1.9E-25	203	246	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.1E-11	203	237	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSEKDDGLGL GLSLKLGWGE NDDDNNNNLN HHQQQQYPFY VHKPPQSVPN QRASFNNLFH 60 FHDRSSETRS FLRGIDVNLP PPPPSAVVDD ENAVSSPNST ISSISGKRSE REGNGDENER 120 TSSSRGGGSD DDDGGACGGD GDGEASRKKL RLSKEQALVL EETFKEHNSL NPKQKQALAK 180 QLNLMPRQVE VWFQNRRART KLKQTEVDCE YLKNCCENLT EENRRLQKEV QELRALKLSP 240 QLYMNMNPPT TLTMCPSCER VAVSSTSFSS SATMPSAPPP ANLNPAGPTI QRPVPVNPWA 300 AMLNQHRGRP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	SRKKLRL
2	195	203	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38408	0.0	cotyledon\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G114300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003521080.1	0.0	homeobox-leucine zipper protein HAT3
Swissprot	P46602	1e-100	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	K7KEF0	0.0	K7KEF0_SOYBN; Uncharacterized protein
STRING	GLYMA03G26701.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105
Representative plant	OGRP196	16	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	8e-79	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Glyma.03G114300.1.p
Entrez Gene	100798480

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]