PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 196aa MW: 21596.4 Da PI: 10.1455

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G111700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.5	3.8e-19	121	170	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg++ tae+Aa a+++a+ k++g Glyma.03G111700.1.p 121 YRGVRRRP-WGKYAAEIRDTKRNG--VRVWLGTYETAEDAALAYDRAAFKMRG 170 9*****.******54465..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.0E-32	120	179	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.261	120	178	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-38	120	184	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.4E-14	121	132	IPR001471	AP2/ERF domain
CDD	cd00018	7.20E-30	121	180	No hit	No description
Pfam	PF00847	5.7E-14	121	170	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.38E-23	121	179	IPR016177	DNA-binding domain
PRINTS	PR00367	9.4E-14	160	180	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSSHALNTNV NALDHFEIPV TTPFQDVSAS VPSIAAFCRS SSFRNIFLTE NWAELPLKEN 60 DTNDMVIYGA LRDAAATGWF PANGNEVSNV SVAVKMENEG QNSKTTAARG TRTPPKKGLS 120 YRGVRRRPWG KYAAEIRDTK RNGVRVWLGT YETAEDAALA YDRAAFKMRG SKAKLNFPHL 180 IGSDHEPIKV TLKKH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-30	117	183	2	68	ATERF1
3gcc_A	1e-30	117	183	2	68	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20204	0.0	hypocotyl

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269\|PubMed:11950980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00311	DAP	Transfer from AT2G44840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G111700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031073	0.0	KT031073.1 Glycine max clone HN_CCL_194 AP2-EREBP transcription factor (Glyma03g26310.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003521070.1	1e-145	ethylene-responsive transcription factor 13
Refseq	XP_028225034.1	1e-145	ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	3e-58	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A445LA26	1e-143	A0A445LA26_GLYSO; Ethylene-responsive transcription factor 13
TrEMBL	I1JMQ9	1e-143	I1JMQ9_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA03G26310.1	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-51	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Glyma.03G111700.1.p
Entrez Gene	100793366

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]