PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G105000.3.p

Common Name

GLYMA_03G105000, LOC100808919

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 373aa MW: 42005 Da PI: 7.3534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G105000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	2e-05	200	227	4	31
HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 4 ahnerErrRRdriNsafeeLrellPkas 31 h ++Er+RR+++ ++f L +P + Glyma.03G105000.3.p 200 DHIMAERKRRQDLTERFIALSATIPGLK 227 599**********************973 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.74E-5	200	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-5	200	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEDSWENWIS SLEMGEDNNS NGQSHTNSLD RDKLLTGIDL EPPDFSFHQS DHHHHHTYTM 60 SYNHHHSNNN DFPTTSTMGS SSLSYDEDAS FDERHGKMLK CNSSNSINIS QDVANSHIPS 120 SSSAPSKSTF ILSFENSTVE PALHDRVPNY YNNSPNKHFE ATCSSLLSSE ITLISSDHVI 180 TKPKAKQGAK KYRTSSEIKD HIMAERKRRQ DLTERFIALS ATIPGLKKER VKVLENENKR 240 KTTYSKIFIK KSQVCSREEA TSSCETNSNY RSTPPPLPQV EARMLEKEVL IGIHCQKQKD 300 IVLKIMALLQ NLHLSLASSS VLPFGTSTVK VTIIAQMGDK YGMTVNDLVK RLRQDLLKSH 360 DIQESHSKEC QI*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEDSWENWIS SLEMGEDNNS NGQSHTNSLD RDKLLTGIDL EPPDFSFHQS DHHHHHTYTM  60
SYNHHHSNNN DFPTTSTMGS SSLSYDEDAS FDERHGKMLK CNSSNSINIS QDVANSHIPS  120
SSSAPSKSTF ILSFENSTVE PALHDRVPNY YNNSPNKHFE ATCSSLLSSE ITLISSDHVI  180
TKPKAKQGAK KYRTSSEIKD HIMAERKRRQ DLTERFIALS ATIPGLKKER VKVLENENKR  240
KTTYSKIFIK KSQVCSREEA TSSCETNSNY RSTPPPLPQV EARMLEKEVL IGIHCQKQKD  300
IVLKIMALLQ NLHLSLASSS VLPFGTSTVK VTIIAQMGDK YGMTVNDLVK RLRQDLLKSH  360
DIQESHSKEC QI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G105000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006576686.1	0.0	transcription factor bHLH18 isoform X2
Refseq	XP_028224969.1	0.0	transcription factor bHLH18-like isoform X2
TrEMBL	A0A0R0KP36	0.0	A0A0R0KP36_SOYBN; Uncharacterized protein
TrEMBL	A0A445LA70	0.0	A0A445LA70_GLYSO; Transcription factor bHLH25 isoform B
STRING	GLYMA03G25100.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G105000.3.p
Entrez Gene	100808919