PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G091500.2.p | ||||||||
Common Name | GLYMA_03G091500, LOC100802375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 20663.8 Da PI: 9.655 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.6 | 3.2e-26 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++ra+ r gC+a++ vk ++ gkw+vtk+++eH+H l+ Glyma.03G091500.2.p 11 NFYEEYARREGFVVRLDRCHRSEVDKQIISRRFSCNKQGFHVRVRNKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLN 100 6*******************************************9999***************************************885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-23 | 11 | 100 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEFQSEEAAK NFYEEYARRE GFVVRLDRCH RSEVDKQIIS RRFSCNKQGF HVRVRNKTKP 60 VHKPRASIRE GCEAMMYVKV NTCGKWVVTK FVKEHSHLLN ASALPYNSLI ESKDRIIQQL 120 AKELEHQDRL CQHYRRQLFS LLETVDEQTK CLSTKVELVV NTVKKLENEV QKPLI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21732 | 0.0 | leaf| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G091500.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097755 | 0.0 | BT097755.1 Soybean clone JCVI-FLGm-16I6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576241.1 | 1e-128 | uncharacterized protein LOC100802375 isoform X1 | ||||
Refseq | XP_028224876.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A445L9L5 | 1e-127 | A0A445L9L5_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B | ||||
TrEMBL | K7KDZ0 | 1e-127 | K7KDZ0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G22670.2 | 1e-128 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 5e-53 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G091500.2.p |
Entrez Gene | 100802375 |