PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 507aa MW: 56655.4 Da PI: 8.7198

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G082400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	57	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+e+d+ l +av+ + g++Wk+Ia+ ++ g+++ qc +rwqk+l Glyma.03G082400.1.p 57 RGGWTEEDDDTLTNAVQVFNGKNWKKIAEFLP-GKSEVQCLHRWQKVL 103 789***************************.**********986 PP
2	Myb_DNA-binding	58.3	1.7e-18	109	155	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++++ v +G++ W++I++ ++ gR +kqc++rw ++l Glyma.03G082400.1.p 109 KGPWTQEEDDKIIEMVSTHGPKKWSLISKSLP-GRIGKQCRERWCNHL 155 79****************************.***********96 PP
3	Myb_DNA-binding	56.5	6.2e-18	161	204	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE++ l da++ +G++ W+ Ia+ + gRt++++k++w++ Glyma.03G082400.1.p 161 KDPWTQEEELALMDAHRIHGNK-WAEIAKVLH-GRTDNSIKNHWNS 204 689*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.756	52	103	IPR017930	Myb domain
SuperFamily	SSF46689	7.18E-15	55	110	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-14	56	105	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-14	57	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-20	59	115	IPR009057	Homeodomain-like
CDD	cd00167	5.47E-12	60	103	No hit	No description
PROSITE profile	PS51294	30.991	104	159	IPR017930	Myb domain
SuperFamily	SSF46689	3.37E-31	106	202	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-17	108	157	IPR001005	SANT/Myb domain
CDD	cd00167	4.23E-15	111	155	No hit	No description
Pfam	PF13921	9.6E-19	112	170	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-27	116	161	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-16	160	208	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.526	160	210	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-24	162	210	IPR009057	Homeodomain-like
CDD	cd00167	5.91E-12	163	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MAEEKSEQHC SENKQTNANS SSSVSEGSGS AMPKSSTERK SALPSNRRTT GPVRRARGGW 60 TEEDDDTLTN AVQVFNGKNW KKIAEFLPGK SEVQCLHRWQ KVLHPELVKG PWTQEEDDKI 120 IEMVSTHGPK KWSLISKSLP GRIGKQCRER WCNHLNPDIK KDPWTQEEEL ALMDAHRIHG 180 NKWAEIAKVL HGRTDNSIKN HWNSSLKKKM NFYLATGRLP PIVSSSKTTD INLGNSDKNQ 240 LESSETVREF GDSSNVPAKG SADSDCIECN RSSNKGFSCS NLEPVFGDYF RINSEPKFEN 300 PGLNDNPRVD HCMSNGENKS CSLTRNFYSK ESQTLGSFCY EPTLPLDSYY SNISGLQQNE 360 LFASPMMSSV GYLTPPPVKG SELCSESPES ILKKAAKTFP TPSILRKRSV VKRPVTPSAV 420 AKGVNDSHAY NEQERTNDIT GSEVVRLPVS PVNNCYGSNI PHNKAFNTTS PYRSRSRQTA 480 IKCLEKQLDF AFEKEKHARK MKKCDD*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MAEEKSEQHC SENKQTNANS SSSVSEGSGS AMPKSSTERK SALPSNRRTT GPVRRARGGW  60
TEEDDDTLTN AVQVFNGKNW KKIAEFLPGK SEVQCLHRWQ KVLHPELVKG PWTQEEDDKI  120
IEMVSTHGPK KWSLISKSLP GRIGKQCRER WCNHLNPDIK KDPWTQEEEL ALMDAHRIHG  180
NKWAEIAKVL HGRTDNSIKN HWNSSLKKKM NFYLATGRLP PIVSSSKTTD INLGNSDKNQ  240
LESSETVREF GDSSNVPAKG SADSDCIECN RSSNKGFSCS NLEPVFGDYF RINSEPKFEN  300
PGLNDNPRVD HCMSNGENKS CSLTRNFYSK ESQTLGSFCY EPTLPLDSYY SNISGLQQNE  360
LFASPMMSSV GYLTPPPVKG SELCSESPES ILKKAAKTFP TPSILRKRSV VKRPVTPSAV  420
AKGVNDSHAY NEQERTNDIT GSEVVRLPVS PVNNCYGSNI PHNKAFNTTS PYRSRSRQTA  480
IKCLEKQLDF AFEKEKHARK MKKCDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	3e-63	60	210	9	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-63	60	210	9	159	MYB PROTO-ONCOGENE PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269\|PubMed:26069325}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250\|UniProtKB:Q94FL9, ECO:0000269\|PubMed:26069325}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G082400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522206.1	0.0	transcription factor MYB3R-5
Refseq	XP_025983614.1	0.0	transcription factor MYB3R-5
Swissprot	Q6R032	1e-126	MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBL	K7KDR9	0.0	K7KDR9_SOYBN; Uncharacterized protein
STRING	GLYMA03G19470.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6616	34	49
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-121	myb domain protein 3r-5

Link Out ? help Back to Top
Phytozome	Glyma.03G082400.1.p
Entrez Gene	100777236

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]