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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G080000.1.p | ||||||||
Common Name | GLYMA_03G080000, LOC100783663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25973 Da PI: 9.4568 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.1 | 2.3e-13 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n +r+ f +R+ng+lKK E+ +LCd+ ++ ii+ ++ Glyma.03G080000.1.p 11 ISNPVKRKAVFNQRKNGLLKKVDEITTLCDIHACAIIYTPD 51 99************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.287 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.34E-22 | 2 | 83 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-19 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARKKVNLTY ISNPVKRKAV FNQRKNGLLK KVDEITTLCD IHACAIIYTP DKPEPEVWPS 60 DQGVEDVIFR FRGVSELARS KRMFCQEKFL KRNIIKARGQ LKKLRNENRK KEIGLFMCQY 120 FLGGNHLDNA NIIDLNDIRF LVDKKLEEIT KKIEMLHVQE VTSATENRGE TMIEEKQALM 180 TNVDAMPNLN WSNDNINASG GDSMLTLEDI NVQSGWLNQF ILSKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G080000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522136.1 | 1e-167 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | I1JLP7 | 1e-166 | I1JLP7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G13570.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16996 | 2 | 8 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-40 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G080000.1.p |
Entrez Gene | 100783663 |