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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.03G070500.1.p |
Common Name | GLYMA_03G070500, LOC100779003 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ARF |
Protein Properties |
Length: 692aa MW: 76833.4 Da PI: 6.4328 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.03G070500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.7 | 1.1e-23 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f kvlt sd++++g +++ +k+a e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF
Glyma.03G070500.1.p 126 FSKVLTASDTSTHGGFSVLRKHAMEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 213
88****************************977777888*************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ +++el+v+v+r
Glyma.03G070500.1.p 214 RGDNGELRVGVRR 226
3489999****98 PP
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2 | Auxin_resp | 92.8 | 5.8e-31 | 252 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t++ F v+Y+Pr+ s+F+++v+k+++a+ +++svGmR+km+fe++ds+e +r+sGt+vgv+d++p +W nSkWrsLk
Glyma.03G070500.1.p 252 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAM-NRFSVGMRLKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 332
789***************6..9*************.89****************9833577**********99.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 692 aa
Download sequence Send
to blast |
MLSRAANGEV AGSGYSGEDE MYEPLWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ 60 ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESNQDEPMN PDPCTAEPPR 120 APVHSFSKVL TASDTSTHGG FSVLRKHAME CLPALDMSQP TPTQELVAKD LHGYEWRFKH 180 IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS 240 SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIISVNKY LEAMNRFSVG MRLKMRFEGD 300 DSAETDKRFS GTIVGVEDIS PHWVNSKWRS LKVQWDEPAA VPRPDRVSPW EIEPFVASAS 360 TPSVQPTMVK TKRPRPPSET PDVDTTSAAS VFWDAGLQQA DMAQKNVLAE SKRNDSTGTW 420 HHMQTDMNSK SNSGNAMLRN QTEGSWLSSP HSSCPSHLFQ DATDDSKSVS AWPVSKPHSS 480 RLNNDHVLDQ VDKESKVETA TSYRLFGIDL IDHSRNSPSV EKASAQAGNA PKVTTEGCTS 540 TLTRTDAGHL SDVPMASSKE RKQEQQQVSP KETQSKQICR SRTKVQMQGV AVGRAVDLTM 600 LDGYDQLINE LEEMFDIKGQ LQHRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS 660 SQDVKKMSCG SKLPISSVED GTVISSDTTE T*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldx_A | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
4ldx_B | 1e-164 | 5 | 355 | 3 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |