![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.03G067000.1.p | ||||||||
Common Name | GLYMA_03G067000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24218.8 Da PI: 9.8706 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 136 | 179 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W +e + +v + +++ g Wk I++++ ++t+ q+ s+ qky Glyma.03G067000.1.p 136 WIKEGHRSFVLGLEKYEHGGWKNISKKFVPTKTPTQVASHAQKY 179 667778999999*****************9*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.47E-13 | 131 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-11 | 132 | 183 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 135 | 180 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-4 | 136 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MQLEVLALAP STYEVPVILA PTTSPIVDAP TKVLALAIDE RVLGHTALAP QRVYTFLDLV 60 PVLSAHTTHV CAPQRVFASQ VPAKSLEQTL NSIAFEQVHV PISYQHHLLS HNTKSNSIKL 120 FGDSSRSVHC NKYTHWIKEG HRSFVLGLEK YEHGGWKNIS KKFVPTKTPT QVASHAQKYF 180 ERKKAPKKEK KRRSIHDTTL EDIDMIVTPH IDQHN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.03G067000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028220306.1 | 2e-59 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A0R0KPZ9 | 1e-157 | A0A0R0KPZ9_SOYBN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13860 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05790.1 | 1e-18 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.03G067000.1.p |