PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G033600.1.p
Common NameGLYMA_03G033600, LOC100780611
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 389aa    MW: 43352.8 Da    PI: 4.8105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G033600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C +sF +   L  H+r+H
  Glyma.03G033600.1.p  4 HKCKLCLRSFANGRALGGHMRSH 26
                         79********************9 PP
2zf-C2H212.10.00058227249123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C k+F++   L  H  +H
  Glyma.03G033600.1.p 227 YKCETCEKVFRSYQALGGHRASH 249
                          9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.074426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.2E-11226251IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-7226249No hitNo description
SMARTSM003550.029227249IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201227254IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-7283310No hitNo description
PfamPF139121.8E-10288310IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286288310IPR007087Zinc finger, C2H2
SMARTSM003550.22288310IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280290310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEKHKCKLCL RSFANGRALG GHMRSHMMNL PVPPKQSELV PIQLSFEAES SPSQSSSSFY  60
GLRENPKKNF RFADPEFSFA AAETSSVILQ DRESETESSR NPTRRRSKRA WQQLGGDSGG  120
GGVSDESEKK MMKVFDAVNK NNNESASSVS DTTTEEAVAF CLMMLSRDKW KENNKLLYDN  180
KVEIAEYNDD YDDEEDEDEE EEEDEEIYES EEELKSVKKS NKVRGRYKCE TCEKVFRSYQ  240
ALGGHRASHK KIKLNNCENK NKNNNNNNDD EAEQLEVQHV VVVEKKIHEC PVCFRVFASG  300
QALGGHKRTH VIGSSTAAAT TTATAITTVS VRNSVATVSV RTTSTARVVG DSLIDLNLPA  360
PMDDDEEEEG NVSQFEDSAV SDAEFVKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G033600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965800.0BT096580.1 Soybean clone JCVI-FLGm-20J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239999.10.0zinc finger protein ZAT9-like
TrEMBLC6TG360.0C6TG36_SOYBN; Uncharacterized protein
STRINGGLYMA03G03950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-51C2H2-like zinc finger protein