PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G031800.2.p
Common NameGLYMA_03G031800, LOC100794596
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 704aa    MW: 77853 Da    PI: 6.0803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G031800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.92.6e-983477023374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+
  Glyma.03G031800.2.p 347 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQ 430
                          689*************************************************9...44444445555...59****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          f+++t+Nqa+ eave+++r+H+iDfdi+ G+QW +++q++a R++g+psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fefnvl 
  Glyma.03G031800.2.p 431 FANFTCNQALIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFEFNVLS 520
                          *****************************************************************************************9 PP

                 GRAS 183 akrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                           ++l++ +   L ++  +Ea++Vn+ ++ ++ +      +s  ++vL++vk+l+Pkvvv  ++ +d  + ++ + +++ l++ysal++sl
  Glyma.03G031800.2.p 521 IESLNSPSCPLLgKFFDNEAIVVNMPVSSFTNY------PSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESL 604
                          99999999999967788**********888877......555568********************************************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          +a    + +  +k+Er++++++i++++   +      +e+l  Wr+ ++++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+
  Glyma.03G031800.2.p 605 DAV-NVNLDVLQKIERHFIQPAIKKIILGHHHF----QEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLC 689
                          665.3466999****************998887....89*************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          W++++L+svS Wr
  Glyma.03G031800.2.p 690 WQKKELISVSTWR 702
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.435319682IPR005202Transcription factor GRAS
PfamPF035149.1E-96347702IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MKVMPLPFEE FQGKGVLDFS SASDSFSVLL HNPQPKWTID KEDYCYVGSI TEPTSVLGSR  60
RSLSPPTSSS TMSSSLGSSN NSTSKGGGGT SANTTNNPTP PSDYNNNNPP QESSPEKCGI  120
RMEDWECQDQ SILRLIMGDV EDPSAGLSKL LQSTACGSQS ADFNAGFGVV DQQGLNMNMN  180
MNMVGGNIDP NYPAGFPFIA ENMDGQNAKA GSGTGQVSES VVFSANNPLM VSSSVSPGVF  240
TSQQQQQEFG VVDEKPQVQE QQVFSQHQAK HHLFDTIGHN FQAPRLSLLD SGQEVFGRRQ  300
QTQLPLFPHH MQQQQQQQSM VMPSTKQQKV SSTGDDASHQ LQQAIFDQLY KTAELIEAGN  360
PVHAQGILAR LNHQLSPIGR PFQRAAFYMK EALMSLLHSN AHSFMAFSPI SFIFKIGAYK  420
SFSEISPVLQ FANFTCNQAL IEAVERSDRI HVIDFDIGFG VQWSSFMQEI ALRSSGAPSL  480
KVTAIVSPST CDEVELNFTR ENLIQYAKDI NVSFEFNVLS IESLNSPSCP LLGKFFDNEA  540
IVVNMPVSSF TNYPSLFPSV LHFVKQLRPK VVVTLDRICD QMDVPLPTNV VHVLQCYSAL  600
LESLDAVNVN LDVLQKIERH FIQPAIKKII LGHHHFQEKL PPWRNLFMQS GFSPFTFSNF  660
TEAQAECLVQ RAPVRGFHVE RKPSSLVLCW QKKELISVST WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2835170125378Protein SCARECROW
5b3h_A2e-2835170124377Protein SCARECROW
5b3h_D2e-2835170124377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.106830.0cotyledon| flower| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G031800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576434.10.0scarecrow-like protein 6
RefseqXP_028224252.10.0scarecrow-like protein 6
SwissprotO813161e-123SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A445L6K60.0A0A445L6K6_GLYSO; Scarecrow-like protein 6 isoform B
TrEMBLK7KCJ80.0K7KCJ8_SOYBN; Uncharacterized protein
STRINGGLYMA03G03760.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]