PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G025400.1.p
Common NameGLYMA_03G025400, LOC100817146
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 331aa    MW: 37607.7 Da    PI: 6.5129
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G025400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Glyma.03G025400.1.p 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-13257311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.79E-13269312No hitNo description
PfamPF139204.5E-9269311No hitNo description
SMARTSM001841.3E-4270307IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.542270308IPR001841Zinc finger, RING-type
CDDcd001623.53E-8270311No hitNo description
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDSDQPAKS AENQQTEQVC SFFRKPVNKK NLRKRTIEIE DNEEDSNNET SLLHIQKKTL  60
KADNKLYFST GSSKSSASAE PSEESGKTVF QFESSKEIQV QHDSKATAIL ETETEFSKDA  120
RAIRERALKQ AEESLKGKSA SSEDKKLYKG MNSYKDYKAG FRREQTIASE KAGGSHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQMEK EWEEAEKQRK  240
MRLAAGEDAD EEEGANLTDE DDEDSLPFAC FICRNSFVDP VVTKCKHYFC EHCALKHHSK  300
NKKCFVCNQP TLGIFNVAHE IRRKMAEDKS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-701632511317RING finger protein 113A
5z58_M3e-701632511317RING finger protein 113A
6ff4_t3e-701632511317RING finger protein 113A
6ff7_t3e-701632511317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.49750.0hypocotyl| leaf| pod| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G025400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304643.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_003521790.10.0zinc finger CCCH domain-containing protein 1 isoform X1
RefseqXP_028224191.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-163C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0B2RTQ90.0A0A0B2RTQ9_GLYSO; Zinc finger CCCH domain-containing protein 1
TrEMBLI1JKM90.0I1JKM9_SOYBN; C3H zinc finger protein
STRINGGLYMA03G02920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-150C3H family protein