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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G018000.4.p | ||||||||
Common Name | GLYMA_03G018000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 25258.8 Da PI: 8.2881 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5.2e-09 | 11 | 33 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t+ C++++ G Ck+Gd+C+ H+ Glyma.03G018000.4.p 11 TSTCKYWMN-GNCKFGDQCRSLHS 33 889******.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 8 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 8 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 11 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 11 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF53098 | 9.74E-15 | 68 | 192 | IPR012337 | Ribonuclease H-like domain |
Gene3D | G3DSA:3.30.420.10 | 2.1E-6 | 71 | 193 | IPR012337 | Ribonuclease H-like domain |
CDD | cd06222 | 2.73E-29 | 71 | 187 | No hit | No description |
Pfam | PF13456 | 5.7E-24 | 72 | 189 | No hit | No description |
PROSITE profile | PS50879 | 9.389 | 94 | 191 | IPR002156 | Ribonuclease H domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090502 | Biological Process | RNA phosphodiester bond hydrolysis, endonucleolytic | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFLHRTAPPP TSTCKYWMNG NCKFGDQCRS LHSWSDVEAT FVGTQHVFLD DNPRPTRLVW 60 WTPPPRGFFK LNCDGAFTVY GNKGAAGGVL RDWKGEFILG FSDALIECSS ALEAELWAIK 120 IGMQTVVARG YRNLIVESDS LKAIQIINAH KGDFLRSSIQ HMTRMVDRIC WNHVYRETNS 180 VADGFAKHGL SLSQDQSIRV FDSAPDFIES RLYGDRIGKI YCR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G018000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235048 | 0.0 | AC235048.1 Glycine max strain Williams 82 clone GM_WBb0045O22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158841.1 | 5e-80 | hypothetical protein PHAVU_002G186500g | ||||
TrEMBL | A0A0R0KLC5 | 1e-167 | A0A0R0KLC5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G02000.3 | 1e-161 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.2 | 5e-07 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G018000.4.p |