PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G017300.1.p
Common NameGLYMA_03G017300, LOC100810022
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 342aa    MW: 36845.4 Da    PI: 8.1807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G017300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-203787256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Glyma.03G017300.1.p 37 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 87
                         578******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-153787IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-283794IPR001471AP2/ERF domain
SMARTSM003801.7E-3437100IPR001471AP2/ERF domain
PROSITE profilePS5103220.3633794IPR001471AP2/ERF domain
CDDcd000186.12E-313796No hitNo description
SuperFamilySSF541716.41E-203894IPR016177DNA-binding domain
PRINTSPR003673.7E-73849IPR001471AP2/ERF domain
PRINTSPR003673.7E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAGAEATKYA SSATSPTITA SNNSMATKSN KPISVRRFIG VRQRPSGRWV AEIKDSSQHV  60
RLWLGTYDTP EEAARAYDEA ARALRGENAR TNFAPVSQLV NGQLGQQSGF NNNNNLLSTG  120
SDIGKHGLSF ASLKAKLSKN LQNIMARASD HNNNNNNKSS KSRVSDHFTF ASIFHRRSYQ  180
IPEGDMMKNI EKVVQPSIIV PPMEQSGGDY NSCVANWESA SSVSDCSSEW VGFGNNNSKL  240
GLESDGSEIG EASVGDQGFL EQLMGWVESP DVSDEGSRSK RFKVSSSVLV PPTFTGSPYD  300
CGSPYTGYAS PYNSGYASPY NNNGCASPCN GYASPYYNNK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1537931471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G017300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529962.10.0ethylene-responsive transcription factor ABR1
RefseqXP_028240607.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0B2R5420.0A0A0B2R542_GLYSO; Ethylene-responsive transcription factor ERN1
TrEMBLK7KC890.0K7KC89_SOYBN; Uncharacterized protein
STRINGGLYMA03G01931.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-16related to AP2 11