PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G016600.4.p
Common NameGLYMA_03G016600, LOC100818372
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91244.1 Da    PI: 6.3528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G016600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.1e-21133188156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Glyma.03G016600.4.p 133 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 188
                          688999***********************************************999 PP
2START211.33.5e-663365601206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk+a+ +ep+W++ +    e++n +e++++f++s +     + +ea+r+ g+v+ ++  lve+l+d++ +W e+++    
  Glyma.03G016600.4.p 336 ELALAAMDELVKMAQTGEPLWMRNVeggrEILNHEEYVRNFTPSIGlrpngFVSEASRENGMVIINSLALVETLMDSN-RWAEMFPciia 424
                          5899****************************************99********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          + +t+evissg      galqlm aelq+lsplvp R++ f+R+++q+ +g w++vdvS+ds ++ +  + +v +++lpSg+++++++ng
  Glyma.03G016600.4.p 425 RTSTTEVISSGingtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGLWAVVDVSIDSIRESSGAPTFVNGRRLPSGCVVQDMPNG 514
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+
  Glyma.03G016600.4.p 515 YSKVTWVEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 560
                          ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-21116190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-22120190IPR009057Homeodomain-like
PROSITE profilePS5007117.216130190IPR001356Homeobox domain
SMARTSM003891.7E-17131194IPR001356Homeobox domain
CDDcd000862.09E-18132190No hitNo description
PfamPF000462.2E-18133188IPR001356Homeobox domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PROSITE profilePS5084845.039327563IPR002913START domain
SuperFamilySSF559613.98E-33329560No hitNo description
CDDcd088755.78E-126331559No hitNo description
SMARTSM002349.2E-51336560IPR002913START domain
PfamPF018526.2E-58336560IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-4440529IPR023393START-like domain
SuperFamilySSF559613.3E-22587759No hitNo description
SuperFamilySSF559613.3E-22788828No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MSFGGFLDDK SGSGGARINN FSDIPYNNNN VTNTTTTNNN NNDRMPFGAI SQPRLVTTTP  60
TLAKSMFNSP GLSLALQTSI DGQEDVNRMA ENSFEPNGLR RSREDEHESR SGSDNMDGGS  120
GDEHDAADNP PRKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSRRLC LETRQVKFWF  180
QNRRTQMKTQ LERHENTLLR QENDKLRAEN MSIRDAMRNP MCSNCGGLAI IGEISLEEQH  240
LRIENARLKD ELDRVCALAG KFLGRPVSSL PSLELGMGGN GFAGMPAATL PLAQDFAMGM  300
SVSMNNNALA MVSPPTSTRP AAAGFDRSVE RSMFLELALA AMDELVKMAQ TGEPLWMRNV  360
EGGREILNHE EYVRNFTPSI GLRPNGFVSE ASRENGMVII NSLALVETLM DSNRWAEMFP  420
CIIARTSTTE VISSGINGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGLWAVV  480
DVSIDSIRES SGAPTFVNGR RLPSGCVVQD MPNGYSKVTW VEHAEYEESQ VHQLYRPLLS  540
SGMGFGAQRW VATLQRQCEC LAILMSSAAP SRDHSAITAG GRRSMVKLAQ RMTNNFCAGV  600
CASTVHKWNK LNAAANVDED VRVMTRKSVD DPGEPPGIVL SAATSVWLPV SPHRLFDFLR  660
DERLRSEWDI LSNGGPMQEM AHIAKGQDHG NAVSLLRASA INSNQSSMLI LQETCIDAAG  720
SLVVYAPVDI PAMHVVMNGG DSAYVALLPS GFAIVPDGPG SRGPHQNGPT SSTTTTTNGG  780
DNGVTRVSGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LHCES*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G016600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521284.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
RefseqXP_028224093.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A445L6B40.0A0A445L6B4_GLYSO; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLI1JKE10.0I1JKE1_SOYBN; Uncharacterized protein
STRINGGLYMA03G01860.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]