 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.03G013300.1.p |
| Common Name | GLYMA_03G013300, LOC100798658 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 274aa MW: 30933.9 Da PI: 7.5771 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.03G013300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+lv+++++ Gg+ +W++ ++ g+ R++k+c++rw +yl
Glyma.03G013300.1.p 14 KGPWTAEEDEILVNYINKNGGHgSWRSLPNLAGLLRCGKSCRLRWTNYL 62
79*******************9***********99************97 PP
|
| 2 | Myb_DNA-binding | 46 | 1.2e-14 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T e+++l+++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
Glyma.03G013300.1.p 68 RGSFTLEDEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
899*******************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MGRKPCCDKM GLKKGPWTAE EDEILVNYIN KNGGHGSWRS LPNLAGLLRC GKSCRLRWTN 60
YLRPDIKRGS FTLEDEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM 120
GLDPQTHQPL ASPHNPNDKA HASSSTSTRH MAQWESARLE AEARLSREPH LYYNNNKTDS 180
DYFLRIWNSD LGESFRDVHK LESSIKCESQ SATTDLASLT PASIVKEEFL WGVKKIVSDS 240
SSSSSELHHD SCDTSLQLLL DFPMNNDMSF LEL*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015042 | 5e-97 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
