PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G311100.1.p
Common NameGLYMA_02G311100, LOC100792631
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 238aa    MW: 26090.6 Da    PI: 8.6991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G311100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017120142123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  +H
  Glyma.02G311100.1.p 120 FECSSCNKVFGSHQALGGHRASH 142
                          89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-74669No hitNo description
PROSITE profilePS501579.394769IPR007087Zinc finger, C2H2
PfamPF139123.5E-74771IPR007087Zinc finger, C2H2
SMARTSM003550.024769IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-44869IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-7115142No hitNo description
PfamPF139125.6E-10119143IPR007087Zinc finger, C2H2
SMARTSM003550.21120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554120147IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016173195IPR007087Zinc finger, C2H2
PfamPF139121.0E-12173197IPR007087Zinc finger, C2H2
SMARTSM003550.71173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKRESDCGEA GSSSWCVGKK QKQKRLMEDA GGWKGKISSS SSSSEPRPCT ECGKKFWSWK  60
ALFGHMRCHP ERHWRGINPP PNVIRRQQQM TQEDHEVAAC LLLLANAKDK DKDKEEDVHF  120
ECSSCNKVFG SHQALGGHRA SHKNVKGCFA NNAAIGTSSS TSDQENMMIL HGHKCSICLR  180
VFSTGQALGG HKRCHWDKGD NLGLLADSSS KSLSLVDLNF PPPSFSSPLA LDLRLGL*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G311100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-32AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518589.11e-175zinc finger protein ZAT3
RefseqXP_028185508.11e-175zinc finger protein ZAT3-like
SwissprotO654993e-66ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0B2R8K91e-174A0A0B2R8K9_GLYSO; Zinc finger protein ZAT3
TrEMBLI1JJW11e-174I1JJW1_SOYBN; Uncharacterized protein
STRINGGLYMA02G48090.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-57C2H2-like zinc finger protein