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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.02G292900.2.p |
Common Name | GLYMA_02G292900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C2H2 |
Protein Properties |
Length: 282aa MW: 32436.7 Da PI: 8.1351 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.02G292900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 10 | 34 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C dC s++rk++L++H+ H
Glyma.02G292900.2.p 10 FVCAvdDCQASYRRKDHLTQHLLQH 34
89*******************9887 PP
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2 | zf-C2H2 | 15 | 7.4e-05 | 39 | 64 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kCp +C+ Fs +sn+krH H
Glyma.02G292900.2.p 39 FKCPveNCNSEFSLQSNMKRHTEEiH 64
89*******************87766 PP
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3 | zf-C2H2 | 20.2 | 1.6e-06 | 80 | 104 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ Cp Cgk+F+ s+L++H +H
Glyma.02G292900.2.p 80 HMCPeiGCGKVFRYASQLQKHEDSH 104
68*******************9888 PP
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4 | zf-C2H2 | 17.2 | 1.5e-05 | 171 | 196 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++C+ C+ +FsrksnL +H + H
Glyma.02G292900.2.p 171 FQCEfkGCSCTFSRKSNLDKHKKAvH 196
89*******************99877 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF57667 | 1.12E-7 | 1 | 36 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-10 | 4 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.033 | 10 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 34 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 37 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.85E-6 | 37 | 65 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 39 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 39 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-7 | 75 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.55E-5 | 77 | 106 | No hit | No description |
PROSITE profile | PS50157 | 10.907 | 80 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 80 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 112 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 114 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 30 | 140 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 152 | 193 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.31E-8 | 153 | 205 | No hit | No description |
PROSITE profile | PS50157 | 12.819 | 171 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 171 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 173 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.3E-5 | 195 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.3 | 202 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 204 | 228 | IPR007087 | Zinc finger, C2H2 |
Sequence ? help Back to Top |
Protein Sequence Length: 282 aa
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to blast |
MQSHSLERPF VCAVDDCQAS YRRKDHLTQH LLQHEGKIFK CPVENCNSEF SLQSNMKRHT 60 EEIHDDSSTT TSSDKSHKQH MCPEIGCGKV FRYASQLQKH EDSHVNLESV DMVCLEPGCL 120 KHFPNVQCLQ AHVKSSHQYM TCDICGTKQL KKNIKRHLRS HEAEGSSSET FQCEFKGCSC 180 TFSRKSNLDK HKKAVHLNVK PFACGFPDCG MRFAYKHVRD NHEKTAKHVF TLGDFEEADE 240 EFRSRPRGGR KRTCPTVEVL IRKRVTPPSQ LEHWLFMQDS E*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help
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Source |
Description |
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |