PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G292900.2.p
Common NameGLYMA_02G292900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 282aa    MW: 32436.7 Da    PI: 8.1351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G292900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-051034123
                         EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                         ++C   dC  s++rk++L++H+  H
  Glyma.02G292900.2.p 10 FVCAvdDCQASYRRKDHLTQHLLQH 34
                         89*******************9887 PP
2zf-C2H2157.4e-053964123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                         +kCp  +C+  Fs +sn+krH    H
  Glyma.02G292900.2.p 39 FKCPveNCNSEFSLQSNMKRHTEEiH 64
                         89*******************87766 PP
3zf-C2H220.21.6e-0680104123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp   Cgk+F+  s+L++H  +H
  Glyma.02G292900.2.p  80 HMCPeiGCGKVFRYASQLQKHEDSH 104
                          68*******************9888 PP
4zf-C2H217.21.5e-05171196123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+   C+ +FsrksnL +H +  H
  Glyma.02G292900.2.p 171 FQCEfkGCSCTFSRKSNLDKHKKAvH 196
                          89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-7136No hitNo description
Gene3DG3DSA:3.30.160.604.6E-10436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0331034IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2241037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-63765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.85E-63765No hitNo description
PROSITE profilePS5015710.2013969IPR007087Zinc finger, C2H2
SMARTSM003550.0293964IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-775104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.55E-577106No hitNo description
PROSITE profilePS5015710.90780109IPR007087Zinc finger, C2H2
SMARTSM003550.001480104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
SMARTSM003551.1112137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114137IPR007087Zinc finger, C2H2
SMARTSM0035530140161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6152193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-8153205No hitNo description
PROSITE profilePS5015712.819171201IPR007087Zinc finger, C2H2
SMARTSM003550.0042171196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-5195225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.3202228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQSHSLERPF VCAVDDCQAS YRRKDHLTQH LLQHEGKIFK CPVENCNSEF SLQSNMKRHT  60
EEIHDDSSTT TSSDKSHKQH MCPEIGCGKV FRYASQLQKH EDSHVNLESV DMVCLEPGCL  120
KHFPNVQCLQ AHVKSSHQYM TCDICGTKQL KKNIKRHLRS HEAEGSSSET FQCEFKGCSC  180
TFSRKSNLDK HKKAVHLNVK PFACGFPDCG MRFAYKHVRD NHEKTAKHVF TLGDFEEADE  240
EFRSRPRGGR KRTCPTVEVL IRKRVTPPSQ LEHWLFMQDS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-12722519183Aart
2i13_B2e-12722519183Aart
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.381360.0leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G292900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576122.10.0transcription factor IIIA
SwissprotQ84MZ41e-112TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0R0L3F40.0A0A0R0L3F4_SOYBN; Uncharacterized protein
TrEMBLK7KBG90.0K7KBG9_SOYBN; Uncharacterized protein
STRINGGLYMA02G46236.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-86transcription factor IIIA