PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G287700.5.p | ||||||||
Common Name | GLYMA_02G287700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22444.7 Da PI: 10.1367 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.4e-31 | 27 | 76 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+ Glyma.02G287700.5.p 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 76 79***********************************************8 PP | |||||||
2 | K-box | 95.3 | 9.8e-32 | 96 | 175 | 5 | 84 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 + +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe+L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+ Glyma.02G287700.5.p 96 NAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEGLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKRV 175 44559*************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-40 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.207 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-33 | 20 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.98E-43 | 20 | 94 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-33 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-27 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-33 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-33 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.6E-23 | 102 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.454 | 105 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEFPNEAIIS EGSNSQKKTG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALVVFSSRG RLYEYANNSV RGTIERYKKA CAASTNAESV SEANTQFYQQ EASKLKRQIR 120 DIQNLNRHIL GEGLSSLSLK ELKNLESRLE KGLSRVRSRK HETLFADIEF MQKRVLTISF 180 DAISLLYLLH IYAYSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-20 | 20 | 87 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-20 | 20 | 87 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-20 | 20 | 87 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-20 | 20 | 87 | 1 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37443 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G287700.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093859 | 0.0 | BT093859.1 Soybean clone JCVI-FLGm-14E22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575666.1 | 1e-123 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_006575667.1 | 1e-123 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Refseq | XP_028220342.1 | 1e-123 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_028220346.1 | 1e-123 | agamous-like MADS-box protein AGL5 isoform X2 | ||||
Swissprot | P29385 | 7e-98 | AGL5_ARATH; Agamous-like MADS-box protein AGL5 | ||||
TrEMBL | A0A445LVH6 | 1e-139 | A0A445LVH6_GLYSO; Agamous-like MADS-box protein AGL5 isoform B | ||||
TrEMBL | I1JJ58 | 1e-139 | I1JJ58_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G45730.4 | 1e-122 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.2 | 1e-83 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G287700.5.p |