PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G281700.1.p
Common NameGLYMA_02G281700, LOC100809105
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 897aa    MW: 98952.5 Da    PI: 6.4749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G281700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24129230199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Glyma.02G281700.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 216
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Glyma.02G281700.1.p 217 --WNEKNQLLLGIRRA 230
                          ..8899999****997 PP
2Auxin_resp118.55.3e-39255338183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seF ++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Glyma.02G281700.1.p 255 AAHAAATNSRFTIFYNPRASPSEFAIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-42122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21128229No hitNo description
SMARTSM010191.8E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
PfamPF023625.2E-22129230IPR003340B3 DNA binding domain
PfamPF065078.9E-34255338IPR010525Auxin response factor
PfamPF023094.7E-8751844IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-8752836No hitNo description
PROSITE profilePS5174523.264760846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFAI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL  420
GVTPWMQPRL DPSIPGLQPE LYQAITSSAF QEMRTMDLSK SSQSLLQFQQ TSNVPSAHAS  480
EVQRQLLPQS QLQNTLLHNF QENQVPAQSQ LLQQQLHRYH PYSDQQQQQQ QLKNLPVQQQ  540
LPNVISPMSK FASGTQSQSP PMQALASHCQ QQSFPEPMRN HISGSDVSPI QSLLGSFSQD  600
GTSQLLNLSG SNSVMSSAAI LPKQITAEPP QLPSAASQCI LPQVENLGTS QSNVSELAAL  660
PPFPGREHSA YHGAADPQSN LLFGINIDPS SLMLQSGMSN LRNIGKVNDS LSLPFSTSNC  720
GGATGTDFPL SSNMTTSSCV DESGFLQCSE NVDQANIPTG TFVKVHKSGS FGRSLDISKF  780
SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK  840
ILSPLEVQQM GKVLSPSTSA PGDKLSTPVN SCDNYVSQQE LRSSRNGMAS MGSFHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651335942388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.273790.0cotyledon| flower| hypocotyl| pod| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G281700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519519.10.0auxin response factor 6
RefseqXP_028219791.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445LV940.0A0A445LV94_GLYSO; Auxin response factor
TrEMBLI1JIZ70.0I1JIZ7_SOYBN; Auxin response factor
STRINGGLYMA02G45100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]