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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.02G280000.1.p |
| Common Name | GLYMA_02G280000, LOC100776306 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 356aa MW: 37500.2 Da PI: 8.3444 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.02G280000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 215.4 | 1.3e-66 | 135 | 296 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91
sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq +++a+ + a s+ +++ +k++r +++++++s+t++
Glyma.02G280000.1.p 135 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATVAPVAGSSgSTSGTKKPRL-IASQTTTTSHTST 223
7889**********************************************99998888887777746666777776.588999999**** PP
DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s+++++++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGh fkG+LydqG+e+
Glyma.02G280000.1.p 224 SNTTPPRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHEFKGFLYDQGAEN 296
***********999********************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MWSTPTRSIN YPEMGMFVVA PASSFHPNLH HHHHHHHQPS PNDPAVMVDS LNPATALGVG 60
VIPLLAPTPC HESDNNILGN RTRGGGIQFW QDQQQHNQGN YTKKPQQGLL DHNSNTSSGN 120
LVQNSGGVTA SGTSSGGTTC QDCGNQAKKD CTNRRCRTCC KSRGFDCPTH VKSTWVPAAR 180
RRERQLMTSA TVAPVAGSSG STSGTKKPRL IASQTTTTSH TSTSNTTPPR SFDTSSSHQD 240
AGFKESLPGQ VRAPAVFKCV RVTAVEDGQD EYAYQAVVKI GGHEFKGFLY DQGAENRDVY 300
PNLSELHLGG GNGGSGGAGR NGVSSSSPMM DPNDVYAASG GGLLGGSSAY GNPMN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 7e-72 | Lateral root primordium (LRP) protein-related |
