PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G277000.1.p
Common NameLOC100814800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 280aa    MW: 31202.7 Da    PI: 4.5287
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G277000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.85.9e-196861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  +     +t++   ++++v+  ++fdfl div +
  Glyma.02G277000.1.p  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 86
                         5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-26372IPR009072Histone-fold
SuperFamilySSF471135.65E-20488IPR009072Histone-fold
PfamPF008084.9E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLRRGAK  60
TMNAFHLKQC VQTFNVFDFL KDIVSKVPDL GGSVATGDDH AVTKRRKVAG DDDNDSDEEL  120
KRNKKPEPGH SSGRGRGRGR GRGLGGGIRT VDQEMSSHAK CEDDSDVLKQ NDNHTQSNES  180
MENVLEPEEV KQSFPVSELA EVSVRNFDLN LDPDENMDSL DTPTSVPTSS SAKSVSEEKH  240
EEYPGWSLSE MEKMIIDPIQ LANLNGRIDE DEEDYDEEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G277000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518474.10.0dr1-associated corepressor
RefseqXP_028219364.10.0dr1-associated corepressor-like
TrEMBLA0A368UIJ80.0A0A368UIJ8_SOYBN; Uncharacterized protein
TrEMBLA0A445LV150.0A0A445LV15_GLYSO; Dr1-associated corepressor
STRINGGLYMA02G44500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-64nuclear factor Y, subunit C11