PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 880aa MW: 98845.5 Da PI: 6.8439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G273500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.8	5.4e-11	56	130	2	89
FAR1 2 fYneYAkevGFsvrksksk.kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY eY+k+vGFs + s+ +g + r+fvC +e ++++ ++ C+a+++++++ ++kw+vtk+ ++H+H+l Glyma.02G273500.1.p 56 FYIEYGKRVGFSCKAGLYGgCSTADGANMYREFVCGREDSKRKPPES--------------CNAMIRIEQKGQNKWVVTKFIKDHSHSL 130 9**********9987651568999******99988887777..............************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-7	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-29	273	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.263	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-11	551	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 880 aa Download sequence Send to blast
MGEGSDHQAM ADNGNAESSE GGVSSAENNS GSHVRVGVSE PYVGREFDSE DAAKAFYIEY 60 GKRVGFSCKA GLYGGCSTAD GANMYREFVC GREDSKRKPP ESCNAMIRIE QKGQNKWVVT 120 KFIKDHSHSL GNLSKVHNIR PRKPFSSVGR TMPETYQGVG LVPSGVMYVS MDKNCIPTKN 180 IQGIKNIPAA AAVAETNQPV KSPTMMNYAV RPPSRKRTLG KDAQNLLEYF KKMQAENPGF 240 FYAIQLDEDN HMSNVFWADA RSRTSYSHFG DAVTLDTTYR INQYGVPFAP FTGVNHHGQM 300 ILFGCALLLD DSEASFVWLF KTFLTAMNDR YPVSITTDQD RAIQTAVSQV FPQTRHCISK 360 WHVLREGHEK LAHVCNMHPN FQIELYNCIN LTETIEEFDS SWNFIINKYE LTKNDWLQSL 420 YSARAQWVPA YFRDSFFAAI SPNQGFDGSY FYGFVNHQTT LPLFFRQYEQ ALECWFEKEL 480 ESDYETICTT PVLKTPSPME KQAANLYTRK IFSKFQEELV ETFAYTANRI EEDGENSIFR 540 VAKFEDDQKA YVVTLNLSEL RANCSCQMFE YSGILCRHVL TVFTVTNVLT LPSHYILKRW 600 TRNAKSSAGS VELAGESLGH ESLTSRYSNL CWEAIKYAEE GALTVEIYDT AISALRESGK 660 KISFMRRSVA KVAPPSHPAS GTAYDDRKSP TSTVDTNPLL WPLQDETTQR FNLNDASTPV 720 QSVADLNLPQ MTPVSLQRDD GPPENMVVYP CLKSLTWVME NRNSTPGNRV AVISLKLQDY 780 SRIPSTESEV KFNLSKVSLE PLFNHMVNIS DQLSTPTRKF AVLNLKLPVA ETTSGASEVK 840 FQVSKDTLGA VLRSMAYIRE QLLGPGDAQT EPLSKRPRK*

Sequence ? help Back to Top

Protein Sequence Length: 880 aa Download sequence Send to blast

MGEGSDHQAM ADNGNAESSE GGVSSAENNS GSHVRVGVSE PYVGREFDSE DAAKAFYIEY  60
GKRVGFSCKA GLYGGCSTAD GANMYREFVC GREDSKRKPP ESCNAMIRIE QKGQNKWVVT  120
KFIKDHSHSL GNLSKVHNIR PRKPFSSVGR TMPETYQGVG LVPSGVMYVS MDKNCIPTKN  180
IQGIKNIPAA AAVAETNQPV KSPTMMNYAV RPPSRKRTLG KDAQNLLEYF KKMQAENPGF  240
FYAIQLDEDN HMSNVFWADA RSRTSYSHFG DAVTLDTTYR INQYGVPFAP FTGVNHHGQM  300
ILFGCALLLD DSEASFVWLF KTFLTAMNDR YPVSITTDQD RAIQTAVSQV FPQTRHCISK  360
WHVLREGHEK LAHVCNMHPN FQIELYNCIN LTETIEEFDS SWNFIINKYE LTKNDWLQSL  420
YSARAQWVPA YFRDSFFAAI SPNQGFDGSY FYGFVNHQTT LPLFFRQYEQ ALECWFEKEL  480
ESDYETICTT PVLKTPSPME KQAANLYTRK IFSKFQEELV ETFAYTANRI EEDGENSIFR  540
VAKFEDDQKA YVVTLNLSEL RANCSCQMFE YSGILCRHVL TVFTVTNVLT LPSHYILKRW  600
TRNAKSSAGS VELAGESLGH ESLTSRYSNL CWEAIKYAEE GALTVEIYDT AISALRESGK  660
KISFMRRSVA KVAPPSHPAS GTAYDDRKSP TSTVDTNPLL WPLQDETTQR FNLNDASTPV  720
QSVADLNLPQ MTPVSLQRDD GPPENMVVYP CLKSLTWVME NRNSTPGNRV AVISLKLQDY  780
SRIPSTESEV KFNLSKVSLE PLFNHMVNIS DQLSTPTRKF AVLNLKLPVA ETTSGASEVK  840
FQVSKDTLGA VLRSMAYIRE QLLGPGDAQT EPLSKRPRK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G273500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235227	0.0	AC235227.1 Glycine max strain Williams 82 clone GM_WBb0025G03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518461.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_006575596.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_028218917.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_028218925.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A445LUV3	0.0	A0A445LUV3_GLYSO; Protein FAR1-RELATED SEQUENCE 3 isoform A
TrEMBL	I1JIP9	0.0	I1JIP9_SOYBN; Uncharacterized protein
STRING	GLYMA02G44110.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Glyma.02G273500.1.p
Entrez Gene	100807296

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]