 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.02G269900.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
HB-other |
Protein Properties |
Length: 296aa MW: 33383.3 Da PI: 5.9124 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.02G269900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 24.4 | 5.1e-08 | 227 | 259 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55
+ + +++++ LA+++gL+ +q+ +WF N+R ++
Glyma.02G269900.1.p 227 PSVEESQKQALAESTGLDMKQINNWFINQRKRH 259
6678999***********************885 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MIGFGGNSCS ELSEMDMTNM ETNRKFLSLP LSNNNNSGDN RRVPVTSNSI AQEHHYSHHH 60 NPTDTCSVRD KIMAHPLFPR LLSSYLNCLK VGAPPEVVAS LEESYAKYES FNASSGRIGG 120 GSIGEDPALD QFMEAYCEML IKYEQELTKP FKEAMLFFSR IECQLKALAV SSDFVMDRCF 180 TTMKLLEINP CGKVLVRGYV SSDESRFNLL SLVKVVVLLA CVNVFKPSVE ESQKQALAES 240 TGLDMKQINN WFINQRKRHW KPSEDMQFAV MDATNYYMEN VMCKPFPMDS MPMLL*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EF533702 | 1e-150 | EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence. |