PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 216aa MW: 23433 Da PI: 5.3332

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G267400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.6e-19	25	75	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a+++a+++++g Glyma.02G267400.1.p 25 TRFRGVRKRP-WGRFAAEIRDpWK----KQRVWLGTFDSAEDAARAYDKAARSFRG 75 589*****.******883....5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.1E-12	25	75	IPR001471	AP2/ERF domain
CDD	cd00018	2.33E-31	25	83	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.0E-31	26	83	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-36	26	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	26	83	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.288	26	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-10	27	38	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-10	49	65	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRRGRTAAAA AAVVDPTPDQ AKETTRFRGV RKRPWGRFAA EIRDPWKKQR VWLGTFDSAE 60 DAARAYDKAA RSFRGPKAKT NFPPFPGPAE ADHHSQIPLY QAHGLSTKFE PVVQVNRPTS 120 SGMSSTVESF SGPRVPSSSS RAKPLVVVVN PIIPLNDDED DCHSDCDSSS SVVDDGQDCV 180 LISSFRQPLP FDLNLPPSDA DDDNDDDLPA TALCL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-21	23	83	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.33049	0.0	cotyledon\| hypocotyl\| leaf\| meristem\| root\| seed coat\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G267400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031072	0.0	KT031072.1 Glycine max clone HN_CCL_96 AP2-EREBP transcription factor (Glyma02g43500.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304374.2	1e-156	AP2-EREBP transcription factor
Refseq	XP_028218135.1	1e-156	ethylene-responsive transcription factor 3-like
Swissprot	Q9SXS8	3e-41	ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBL	A0A0K2CTA8	1e-154	A0A0K2CTA8_SOYBN; AP2-EREBP transcription factor (Fragment)
TrEMBL	A0A445LUJ9	1e-154	A0A445LUJ9_GLYSO; Ethylene-responsive transcription factor 3
STRING	GLYMA02G43500.1	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2263	34	84
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	5e-24	ethylene responsive element binding factor 3

Link Out ? help Back to Top
Phytozome	Glyma.02G267400.1.p

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]