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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G264700.1.p | ||||||||
Common Name | GLYMA_02G264700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37060.4 Da PI: 8.6164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Glyma.02G264700.1.p 62 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 111 59****999.**********954...5**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-37 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 62 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 62 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.70E-20 | 62 | 119 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 62 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 62 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MASLLPQPQE TKPTATTATE TTPSETSITA SANKSSSSNN NNSSSNSRKC KGKGGPDNNK 60 FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFATAEDAAR AYDRAAIILY GSRAQLNLQP 120 SGSSSQSSSS RSSSSSTQTL RPLLPRPSGF TFNFPFNSAP ATTVPYPYNN SHNYTYTPPV 180 LYPIDNSKNH NINTVQVHHP HHYRCPEEVV QVPHSESDLG GLGGNNNIVV DGSIRSTSYQ 240 RHGFLDNINN NNNHVHVQVQ HGVFSNQQQQ HQNSVVEGVN SSVVGSVSSS MDASSVDPDL 300 ALVGTMGLGS SSPFWSMANE DDYTGSLWDY NDPFFFDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-19 | 63 | 118 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19347 | 0.0 | cotyledon| pod| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G264700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF518216 | 0.0 | EF518216.1 Glycine max SGR mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235932.2 | 0.0 | AP2-domain transcription factor SGR | ||||
Refseq | XP_028217824.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A445LUF4 | 0.0 | A0A445LUF4_GLYSO; Ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | K7KAX0 | 0.0 | K7KAX0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G43240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8847 | 29 | 40 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 2e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G264700.1.p |