PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 337aa MW: 38539.7 Da PI: 4.4563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G244600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + G +W+++++ g+ R++k+c++rw +yl Glyma.02G244600.1.p 14 KGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.1	3.1e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ Glyma.02G244600.1.p 71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 6779************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-20	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.533	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-26	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.60E-8	16	61	No hit	No description
PROSITE profile	PS51294	25.609	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	64	117	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-14	71	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.94E-10	74	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLISFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPATHKPLP NANEQNQNQT RQDQQLHHQP VELEEPNQQP LQVDFDPKVD PNKEPEKPET 180 SLESSTITEE AKEEDQIITP LFDTMELMNG FCTDEVPIIE PHEILMPCAP SSSSTTSSSS 240 SSNSTNFLED LQLPDFEWSC NYNDNNTITN NNNNEDKDDD NNNNSSMALW DDDIIGNRYW 300 LINEDDDSDE NQVFDASLTQ FSKMFMESES WGYGLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-28	12	116	5	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36845	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269\|PubMed:23660402}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G244600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031182	0.0	KT031182.1 Glycine max clone HN_CCL_78 MYB/HD-like transcription factor (Glyma02g41180.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519327.1	0.0	transcription factor MYB20
Refseq	XP_028216066.1	0.0	transcription factor MYB20-like
Swissprot	Q9C7U7	2e-97	MYB20_ARATH; Transcription factor MYB20
TrEMBL	A0A445LTL8	0.0	A0A445LTL8_GLYSO; Transcription factor MYB20
TrEMBL	I1JHW1	0.0	I1JHW1_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA02G41180.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF653	34	142
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	3e-92	myb domain protein 20

Link Out ? help Back to Top
Phytozome	Glyma.02G244600.1.p
Entrez Gene	100792103

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]