PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 258aa MW: 28033 Da PI: 6.229

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G242400.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Glyma.02G242400.5.p 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.99E-6	104	133	No hit	No description
PROSITE profile	PS50157	11.344	106	133	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKPNFDLEVE ACAAYESEVS SQVASNVSIQ ETSIGPCSDS LTNISNITNP IGIHPNSDAI 60 SLDLSLNFKN SAPGGRDSIG FSFSSTSESS NEPASQTTAA TIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAMR MGFFSERYAN LASLPLHGSF RSLGIKAHSS LHHGFSPTMR 180 RPEIKNNARF DQGYVGHPIF LEDDESDLLW PGSFRQVAEA GDSHQNFILT GSSNLSFTEV 240 NPPVDIDNST PDLTLKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.64288	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G242400.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093856	0.0	BT093856.1 Soybean clone JCVI-FLGm-17J14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519323.1	0.0	zinc finger protein 4
Refseq	XP_006575473.1	0.0	zinc finger protein 4
Refseq	XP_006575474.1	0.0	zinc finger protein 4
Refseq	XP_006575475.1	0.0	zinc finger protein 4
Refseq	XP_006575476.1	0.0	zinc finger protein 4
Refseq	XP_014625019.1	0.0	zinc finger protein 4
Refseq	XP_014625023.1	0.0	zinc finger protein 4
Swissprot	Q39263	1e-51	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	I1JHU2	0.0	I1JHU2_SOYBN; Uncharacterized protein
STRING	GLYMA02G40960.6	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-53	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Glyma.02G242400.5.p
Entrez Gene	100788768

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]