PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G242400.1.p
Common NameGLYMA_02G242400, LOC100788768
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 258aa    MW: 28033 Da    PI: 6.229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G242400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034106128123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Glyma.02G242400.1.p 106 FSCNYCQRKFFSSQALGGHQNAH 128
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-6104133No hitNo description
PROSITE profilePS5015711.344106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKPNFDLEVE ACAAYESEVS SQVASNVSIQ ETSIGPCSDS LTNISNITNP IGIHPNSDAI  60
SLDLSLNFKN SAPGGRDSIG FSFSSTSESS NEPASQTTAA TIPRVFSCNY CQRKFFSSQA  120
LGGHQNAHKR ERTLAKRAMR MGFFSERYAN LASLPLHGSF RSLGIKAHSS LHHGFSPTMR  180
RPEIKNNARF DQGYVGHPIF LEDDESDLLW PGSFRQVAEA GDSHQNFILT GSSNLSFTEV  240
NPPVDIDNST PDLTLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.642880.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G242400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938560.0BT093856.1 Soybean clone JCVI-FLGm-17J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519323.10.0zinc finger protein 4
RefseqXP_006575473.10.0zinc finger protein 4
RefseqXP_006575474.10.0zinc finger protein 4
RefseqXP_006575475.10.0zinc finger protein 4
RefseqXP_006575476.10.0zinc finger protein 4
RefseqXP_014625019.10.0zinc finger protein 4
RefseqXP_014625023.10.0zinc finger protein 4
SwissprotQ392631e-51ZFP4_ARATH; Zinc finger protein 4
TrEMBLI1JHU20.0I1JHU2_SOYBN; Uncharacterized protein
STRINGGLYMA02G40960.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-53zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]