PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G240500.1.p
Common NameGLYMA_02G240500, LOC100792628
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 644aa    MW: 73271.2 Da    PI: 5.1209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G240500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5651321128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nratksgyWkatgk
  Glyma.02G240500.1.p   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFYSPRDRKYPNGSRTNRATKSGYWKATGK 93 
                          79****************************.99***************6434445667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s + ++vg+kktLv+y+grap+g++t+Wvmheyrl
  Glyma.02G240500.1.p  94 DRKVNS-QARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-643155IPR003441NAC domain
PROSITE profilePS5100561.2595155IPR003441NAC domain
PfamPF023658.9E-306132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFYSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSQ ARAVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDERECETN SGLQDSYALC RVVKKTAVIP PKVGEHHYVN VPNANQITSD  180
HSSSIEIYPE GRGEDLDSTN YFMPVDACSP HNMGNETSLT INSGIMTRDH EKWSHFSSQD  240
PLFSLPTSSF SKFGAIAYPP SKVDIALEYA RMQHRFVLPP LEVDDFPQVG ISELKMTQAS  300
GSMQGSRTET DILQEILSVA QVSQELINQS NYSQEWGGNN DNYAPREDDF TFMVGTNYNH  360
SNHGMSSMRY ADKTWEDANT RTIEIGDVDE EFKAERMVEN LRWVGMSSED LQKMEEQKIV  420
PIEDISSFQT NEVQESEQHS NKEHNDDTEI NDFSLGFIND NDGPNENFIE DGNIDDYSSS  480
PSFEVVEEIK VNHGMLVSTH QVVETFFHQI VPSQTVQVHL INSVMAHNNH YVENAEAMLM  540
IMENKGSSLR NKVKAYVMGK LIKPSKTIAS AIVFVFALVL MHCVYLKEEV EIWNESNNEV  600
NWFVGVKSHE KELSAVLKKI GIFLTISLAF CTMWASQNMV VNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-57515720170NAC domain-containing protein 19
3swm_B2e-57515720170NAC domain-containing protein 19
3swm_C2e-57515720170NAC domain-containing protein 19
3swm_D2e-57515720170NAC domain-containing protein 19
3swp_A2e-57515720170NAC domain-containing protein 19
3swp_B2e-57515720170NAC domain-containing protein 19
3swp_C2e-57515720170NAC domain-containing protein 19
3swp_D2e-57515720170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G240500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518362.10.0NAC domain-containing protein 86 isoform X2
TrEMBLI1JHR80.0I1JHR8_SOYBN; Uncharacterized protein
STRINGGLYMA02G40750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-161NAC domain containing protein 28