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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G239600.4.p | ||||||||
Common Name | GLYMA_02G239600, LOC100780393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 768aa MW: 85769.4 Da PI: 6.3622 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2e-23 | 48 | 149 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.02G239600.4.p 48 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 135 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.02G239600.4.p 136 --WNEKNQLLLGIRRA 149 ..8899999****997 PP | |||||||
2 | Auxin_resp | 121 | 8.9e-40 | 174 | 257 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Glyma.02G239600.4.p 174 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 257 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-49 | 32 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 41 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-21 | 47 | 148 | No hit | No description |
SMART | SM01019 | 3.4E-24 | 48 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-22 | 48 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 48 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.2E-35 | 174 | 257 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.3E-8 | 637 | 725 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-7 | 639 | 715 | No hit | No description |
PROSITE profile | PS51745 | 24.155 | 641 | 725 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MLQCMWADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP SKQPSNYFCK TLTASDTSTH 60 GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF 120 VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT 180 NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI 240 SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP 300 GTSSFHDGRD EATNGLMWLR GGPGDQALNS LNFQGSGLLP WMQQRMDPTL LANDHNQHYQ 360 AMFASGLQNL GSGDLMRQQI MNFQQPFNYL QQSGNPNPPL QLQQPQAIQQ SVSSNNILQP 420 QAQVMAENLS QHLLQKSHNN REDQTQQQQQ QRHTYQDTVL LQSDQLHQRQ HSGLPSPSYS 480 KPDFLDSSMK FPASVSPGQN ILGSLCPEGS GNLLNLSRSG QSMLTEQLPQ QSWAPKFTPL 540 QVNAFGNSMQ HVQYSGKDTA MVPPHCNSDT QNPILFGVNI DSSGLLLPTT VPRYTTASAD 600 SDASAMPLGE SGFQSPLYPC GQDSSELVQS AGQVDPQNQT RTFVKVYKSG SVGRSLDISR 660 FSSYHELREE LAQMFGIEGK LEDPLRSGWQ LVFVDRENDV LLLGDDPWES FVNNVWYIKI 720 LSPEDIHKMG EQALESLGPS PGQRLNSTGA DSHEIVSGLP SIGSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-122 | 7 | 278 | 117 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.60688 | 0.0 | cotyledon| leaf| meristem| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G239600.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624944.1 | 0.0 | auxin response factor 8 isoform X3 | ||||
Refseq | XP_014624946.1 | 0.0 | auxin response factor 8 isoform X3 | ||||
Refseq | XP_028215541.1 | 0.0 | auxin response factor 8-like isoform X4 | ||||
Refseq | XP_028215551.1 | 0.0 | auxin response factor 8-like isoform X4 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A0R0L0T9 | 0.0 | A0A0R0L0T9_SOYBN; Auxin response factor | ||||
STRING | GLYMA02G40650.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G239600.4.p |
Entrez Gene | 100780393 |