PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Protein Properties

Length: 408aa MW: 46060.2 Da PI: 9.806

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G237500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.1e-19	140	228	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp kf+eeh +k+ +++lede+g ++e + +++ + l++GW+ F+ +++L++gD +vF+l++ s+f Glyma.02G237500.2.p 140 FIKSMVRSHVYSCFWLGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF 223 89**********************4.4555.49***********..555544..***********************99999 PP ..EEEEE CS B3 91 elvvkvf 97 ++ ++ Glyma.02G237500.2.p 224 --KIYIV 228 ..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-21	133	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-22	135	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.01E-27	138	229	No hit	No description
Pfam	PF02362	3.2E-17	140	228	IPR003340	B3 DNA binding domain
SMART	SM01019	7.2E-23	140	231	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.788	140	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN 60 VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL 120 CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG 180 SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN 240 NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ 300 GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG 360 GSDKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN  60
VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL  120
CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG  180
SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN  240
NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ  300
GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG  360
GSDKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G237500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	3e-71	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624887.1	0.0	putative B3 domain-containing protein At5g58280 isoform X1
Swissprot	Q9FHB2	1e-67	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	K7KAC9	0.0	K7KAC9_SOYBN; Uncharacterized protein
STRING	GLYMA02G40400.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-53	B3 family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G237500.2.p
Entrez Gene	100786265

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]