PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G225700.1.p
Common NameGLYMA_02G225700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 388aa    MW: 44640.8 Da    PI: 8.6833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G225700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-17102148148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W +eEd +l+ +vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Glyma.02G225700.1.p 102 KGQWNQEEDRKLIMLVKQYGERKWAEIAEKLE-GRVGKQCRERWNNHL 148
                          799*****************************.*************97 PP
2Myb_DNA-binding44.82.8e-14154196145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++W++eE+ +lvd +++ G++ W  Ia++++ gR+++ +k++w+
  Glyma.02G225700.1.p 154 KDSWSEEEERILVDTHARVGNR-WCEIAKRIQ-GRSENAIKNHWN 196
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.26897152IPR017930Myb domain
SuperFamilySSF466892.16E-26101195IPR009057Homeodomain-like
SMARTSM007177.8E-16101150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-27103156IPR009057Homeodomain-like
PfamPF139212.8E-18105162No hitNo description
CDDcd001679.84E-15105148No hitNo description
PROSITE profilePS5129417.511153203IPR017930Myb domain
SMARTSM007172.0E-13153201IPR001005SANT/Myb domain
CDDcd001673.62E-10156199No hitNo description
Gene3DG3DSA:1.10.10.604.3E-18157201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVRGESHGGD NGSQIYGYEA INASNPPLTA IDRFLCGHFS HQQQHARNND ASVFAAEEVF  60
NNKWTHINQT PTLCMKNMQV SGKNAKVVGR RSKKQSSVCW IKGQWNQEED RKLIMLVKQY  120
GERKWAEIAE KLEGRVGKQC RERWNNHLRP DIKKDSWSEE EERILVDTHA RVGNRWCEIA  180
KRIQGRSENA IKNHWNATKR RQNSKRKNKK TKSSINGKPH ILEDYIRSKT QIITNSNPTI  240
GSISTTDTTP HITLSQDSAA YPLNPVFYEP FANELLSMQQ IFTENVEASK HPKISPTSYL  300
DYCQMNVDDV GECEYSLQYP DNNNMHLNDT SLFPRETHPT PSNHLPSDLY YPSHLFNVVT  360
SNYGNQNLYN MDFRHQGCSD VKGERWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-411012023104C-Myb DNA-Binding Domain
1msf_C8e-411012023104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G225700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337661e-45CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735101e-45CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576074.20.0transcription factor MYB119
TrEMBLI1JHB90.0I1JHB9_SOYBN; Uncharacterized protein
STRINGGLYMA02G39070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-64myb domain protein 119