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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G223700.3.p | ||||||||
Common Name | GLYMA_02G223700, LOC100787695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 406aa MW: 44173.3 Da PI: 4.9909 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++++ +C++++ +lC +C + H+ H++ Glyma.02G223700.3.p 5 CDFCGDQRSLVYCRSDSACLCLSCDRNVHSAnalsrrHSR 44 *****************************65677777765 PP | |||||||
2 | CCT | 64.6 | 2.9e-22 | 348 | 391 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+ Glyma.02G223700.3.p 348 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 391 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.527 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.23E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.0E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00939 | 47 | 90 | No hit | No description |
Pfam | PF06203 | 8.4E-17 | 348 | 390 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.467 | 348 | 390 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MGYLCDFCGD QRSLVYCRSD SACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRS 60 VEEKISLCQN CDWLGHGTSP SSSMHKRQSI NCYSGCPSAA EFSSIWSFFL DIPSLGEACE 120 QELGLMSINE NIPPEGQNVS GSTEVTDLPS KGKSWAGTPS IPESSSEPRI LDQPPGPANE 180 CVPKLYCPGK KASGICEDDD LYDDFIMDEV DLELENYEEL FGMALSHSEE LFENGGINSL 240 FEAKDMSASA GDSHCQGAVA AEGSSAGLVN PIQPACSNAA SADSVMSTKT EPIVCFTARQ 300 SQSNISFSGV TKDSAGDYQD CGASSMLLMG EPPWCPPCPE SSLHSANRSN AVMRYKEKKK 360 TRKFEKKVRY ASRKARADVR KRVKGRFVKA GDVYDYDPLN QTRSY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27771 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G223700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068899 | 0.0 | HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519240.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_006575398.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_014624640.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_014624644.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_028214123.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028214132.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028214141.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_028214151.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-149 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A445LSC3 | 0.0 | A0A445LSC3_GLYSO; Zinc finger protein CONSTANS-LIKE 9 isoform A | ||||
TrEMBL | I1JH98 | 0.0 | I1JH98_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G38870.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-120 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G223700.3.p |
Entrez Gene | 100787695 |