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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.02G223700.1.p |
Common Name | GLYMA_02G223700, LOC100787695 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
CO-like |
Protein Properties |
Length: 406aa MW: 44173.3 Da PI: 4.9909 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.02G223700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
C+ +++++ +C++++ +lC +C + H+ H++
Glyma.02G223700.1.p 5 CDFCGDQRSLVYCRSDSACLCLSCDRNVHSAnalsrrHSR 44
*****************************65677777765 PP
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2 | CCT | 64.6 | 2.9e-22 | 348 | 391 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R+RvKGrFvk+
Glyma.02G223700.1.p 348 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAG 391
899**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MGYLCDFCGD QRSLVYCRSD SACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRS 60 VEEKISLCQN CDWLGHGTSP SSSMHKRQSI NCYSGCPSAA EFSSIWSFFL DIPSLGEACE 120 QELGLMSINE NIPPEGQNVS GSTEVTDLPS KGKSWAGTPS IPESSSEPRI LDQPPGPANE 180 CVPKLYCPGK KASGICEDDD LYDDFIMDEV DLELENYEEL FGMALSHSEE LFENGGINSL 240 FEAKDMSASA GDSHCQGAVA AEGSSAGLVN PIQPACSNAA SADSVMSTKT EPIVCFTARQ 300 SQSNISFSGV TKDSAGDYQD CGASSMLLMG EPPWCPPCPE SSLHSANRSN AVMRYKEKKK 360 TRKFEKKVRY ASRKARADVR KRVKGRFVKA GDVYDYDPLN QTRSY*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.27771 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| stem |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HM068899 | 0.0 | HM068899.1 Glycine max CONSTANS-like zinc finger protein (COL18) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G48250.1 | 1e-120 | B-box type zinc finger protein with CCT domain |