PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GATA

Protein Properties

Length: 311aa MW: 33339.9 Da PI: 6.5045

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G215600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.8	5.6e-17	210	245	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +g Glyma.02G215600.1.p 210 CKHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRG 245 ********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.234	74	109	IPR010399	Tify domain
SMART	SM00979	1.8E-13	74	109	IPR010399	Tify domain
Pfam	PF06200	6.0E-14	75	108	IPR010399	Tify domain
Pfam	PF06203	6.2E-16	142	184	IPR010402	CCT domain
PROSITE profile	PS51017	12.481	142	184	IPR010402	CCT domain
PROSITE profile	PS50114	10.317	204	255	IPR000679	Zinc finger, GATA-type
SMART	SM00401	5.8E-15	204	257	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.18E-12	206	256	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.3E-16	208	251	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.88E-15	209	255	No hit	No description
Pfam	PF00320	1.2E-14	210	245	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	210	237	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEPSAMYGPS QPLNIPSRIG AGERDDGSGN EPAVDGHHHH IQYETHALDD GAAGGAVVVE 60 DVTSDAVYVS GGGGPEESSQ LTLSFRGQVY VFDAVTPDKV QAVLLLLGGC ELSSGGSPCV 120 DPGAQQNQRG SMEFPKCSLP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ 180 FTSSKKQDGA NSYGTDQDSG QDDSQSETSC KHCGTSSKST PMMRRGPSGP RSLCNACGLF 240 WANRGALRDL SKRNQEHSLP PVEQVDGGND PDCRTAAADP AQNNLAAFSE PVNPALVADR 300 KVFQSQKMLE *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G215600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518268.1	0.0	GATA transcription factor 25
Refseq	XP_028213198.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	5e-87	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A445LSA9	0.0	A0A445LSA9_GLYSO; GATA transcription factor 25
TrEMBL	K7K9Y2	0.0	K7K9Y2_SOYBN; Uncharacterized protein
STRING	GLYMA02G37980.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	5e-77	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Glyma.02G215600.1.p
Entrez Gene	100776838

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]