PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G211900.1.p
Common NameGLYMA_02G211900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 271aa    MW: 29645.2 Da    PI: 7.1958
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G211900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.51.9e-2962118360
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          +vrY+eC+kNhA+s GghavDGC+Efm++ g++g  +++ CaAC+CHRnFHR+e + e
  Glyma.02G211900.1.p  62 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GDDGMLEGVICAACNCHRNFHRKEIDGE 118
                          79**************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-1953117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2663115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-2564115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.04865114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.01E-21193268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-32194269IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-26207263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVPKKGGKLE SDMEFDEQEE HEEEEEMGIP EPAVAVAAPQ TFDSRSKIGG GEARKSAFGV  60
AAVRYRECQK NHAVSFGGHA VDGCCEFMAA GDDGMLEGVI CAACNCHRNF HRKEIDGEMS  120
SFHHRAQPPP PPLHHHHQFS PYYHHRVPQH PTAAGYIHHH LTPPMSQHRP LALPAAASGG  180
GLSREEEDMS NPSSSGGGGG GGGGGSKKRF RTKFTQEQKD KMLAFAEQLG WRIQKHDESA  240
VEQFCAEINV KRNVLKVWMH NNKSTLGKKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-282062651675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194205SGGGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.598350.0flower| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G211900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8896800.0JQ889680.1 Hardenbergia violacea microsatellite Hvio16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518249.10.0zinc-finger homeodomain protein 2 isoform X1
RefseqXP_028212776.10.0zinc-finger homeodomain protein 2-like isoform X1
SwissprotQ6YXH58e-69ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
SwissprotQ9SB617e-69ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0R0KZC70.0A0A0R0KZC7_SOYBN; Uncharacterized protein
STRINGGLYMA02G37481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-62homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]