PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G210500.1.p
Common NameGLYMA_02G210500, LOC100803240
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 347aa    MW: 37863.6 Da    PI: 7.2511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G210500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12137188155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   +++++k+L+
  Glyma.02G210500.1.p 137 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGTINFVKELE 188
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-13135192No hitNo description
Gene3DG3DSA:4.10.280.107.5E-13136191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16136203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYGCNNK DFLYSLVGGD GGGGGGSHEY GFQASSEDKP HVGIIINNNN  60
IDHTLHANWD SSSPSVLQSV KEQWDSHSSP EACTVDQSLP RAFPLPPSSS SPEAAATGRR  120
KRRRTKSAKN KEEIENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYVQR GDQASIIGGT  180
INFVKELEQL LQCMKGQKKR TKEGSGFSDS SPFSEFFMFP QYSTRATQSS SSSSSKGYPG  240
TCEANNNMAR NPSSWAVADI EVTLVDGHAN MKILCKKRPG MLLKMVVGLL SLGLSILHLN  300
VTTVDDMVLT SVSVKVEEGC QLNTVDEIAA AVHQLSRTVQ EEAVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2119124RKRRRT
3137148RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.5610.0hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G210500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519184.10.0transcription factor bHLH94
RefseqXP_028212577.10.0transcription factor bHLH94-like
SwissprotQ9C7T49e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445LS350.0A0A445LS35_GLYSO; Transcription factor bHLH96 isoform A
TrEMBLK7K9V80.0K7K9V8_SOYBN; Uncharacterized protein
STRINGGLYMA02G37313.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]