PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G202600.1.p | ||||||||
Common Name | GLYMA_02G202600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 126aa MW: 14013.9 Da PI: 11.0941 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.5e-11 | 33 | 78 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+ +a K +Ka++L + ++Y++ Lq Glyma.02G202600.1.p 33 HSIAERLRRERIAERMKALQELVTNA-----NKTDKASMLDEIIDYVRFLQ 78 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.14E-11 | 26 | 82 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-16 | 26 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.234 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 29 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 33 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-12 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
ERSFGASAQA NGGGSGQPKQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVTNANK 60 TDKASMLDEI IDYVRFLQLQ VKGTPSSNLA NHVDFAKVLQ PIQSQISEFP IPLSHFFWLR 120 GSKTI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.16666 | 1e-116 | epicotyl| leaf| pod| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G202600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600551.1 | 1e-46 | transcription factor bHLH69 isoform X1 | ||||
Refseq | XP_006600552.1 | 2e-46 | transcription factor bHLH69 isoform X3 | ||||
Refseq | XP_006600553.1 | 1e-46 | transcription factor bHLH69 isoform X4 | ||||
Refseq | XP_006600554.1 | 1e-46 | transcription factor bHLH69 isoform X5 | ||||
Refseq | XP_014625615.1 | 2e-46 | transcription factor bHLH69 isoform X2 | ||||
Refseq | XP_028208596.1 | 1e-46 | transcription factor bHLH69-like isoform X1 | ||||
Refseq | XP_028208597.1 | 2e-46 | transcription factor bHLH69-like isoform X2 | ||||
Refseq | XP_028208598.1 | 2e-46 | transcription factor bHLH69-like isoform X3 | ||||
Refseq | XP_028208599.1 | 1e-46 | transcription factor bHLH69-like isoform X4 | ||||
Refseq | XP_028208600.1 | 1e-46 | transcription factor bHLH69-like isoform X5 | ||||
Swissprot | Q8S3D5 | 3e-36 | BH069_ARATH; Transcription factor bHLH69 | ||||
TrEMBL | A0A0R0L4V1 | 5e-87 | A0A0R0L4V1_SOYBN; Uncharacterized protein (Fragment) | ||||
STRING | GLYMA02G36380.1 | 5e-61 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4778 | 33 | 52 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 9e-25 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G202600.1.p |
Publications ? help Back to Top | |||
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