PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G196500.1.p
Common NameGLYMA_02G196500, LOC100810851
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 665aa    MW: 72483.9 Da    PI: 7.3971
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G196500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-093644011954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.02G196500.1.p 364 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 401
                          554459******************************88 PP
2BELL122.22.1e-39228299172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL+++l+eV++rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Glyma.02G196500.1.p 228 ERQEIQMKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 299
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-64153297IPR006563POX domain
PfamPF075261.3E-49158296IPR006563POX domain
PROSITE profilePS5007112.195342405IPR001356Homeobox domain
CDDcd000861.09E-11345406No hitNo description
SMARTSM003895.3E-9345409IPR001356Homeobox domain
SuperFamilySSF466896.84E-17346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-29348411IPR009057Homeodomain-like
PfamPF059202.7E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MATYFHSNSE IQAGADGLQT LVLMNPGYVQ YSDTPPPPHG GNLVFLNSAA GNASLQNLSH  60
APPPHTQQFV GVPLSAAAAH EPPPPPASMH HDVSALHGFL PRMQYSLWNT IDPNAAAREA  120
PRATQGLSLS LHGEEVRASP SSASGASNGG GVAGIQSVLL SSKYLKATQE LLDEVVNVNS  180
GIKVEQTKKL CFEKTKVVGE SSTAASGGDG SVGGEGSGKR SSELSTTERQ EIQMKKAKLI  240
NMLDEVEQRY RQYHSQMQIV ISSFEQAAGI GSARTYTALA LQTISKQFRC LKDAITGQIR  300
AANKSLGEED CFGAKIEGSR LKYVDHHLRQ QRAIQQLGMI NHNAWRPQRG LPERSVSVLR  360
AWLFEHFLHP YPKDSDKHML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEMKDHEL  420
NGSEEKSSKN GEDPATKTST PQEKRAASEI ESKSFNSKQD VSKNQNTPIV STSPPSTSPV  480
GGSVKNQSGF SFMGSSELDG ITQGSPKKPR NHEILRSPNR VPSINMDVKA NEANNEQQLS  540
MDLERQNRDG YTFMGNQTNF ISGFGQYPME EIGRFDAEQF TPRFSGNNGV SLTLGLPHCD  600
TLSGTHQSFL PNQNIQLGRG LDIGEPNQFG ALNNSTSHSS AAFESINMQN PKRFAAQLLP  660
DFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16351409563Homeobox protein Meis2
3k2a_B4e-16351409563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.323760.0flower| hypocotyl| leaf| meristem| pod| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G196500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311670.0KT031167.1 Glycine max clone HN_CCL_176 homeodomain/HOMEOBOX transcription factor (Glyma10g10040.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519115.10.0BEL1-like homeodomain protein 1
RefseqXP_006575286.10.0BEL1-like homeodomain protein 1
RefseqXP_006575287.10.0BEL1-like homeodomain protein 1
RefseqXP_014623899.10.0BEL1-like homeodomain protein 1
RefseqXP_014623905.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLI1JGH70.0I1JGH7_SOYBN; Uncharacterized protein
STRINGGLYMA02G35450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-176BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]