PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G195000.1.p
Common NameGLYMA_02G195000, LOC100808195
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 336aa    MW: 36823.4 Da    PI: 9.383
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G195000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.11.7e-29166221258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           p YVNaKQy++I++RRq+Rak+  e+k+ +k rkpy+heSRh hA rRpRg+gGrF
  Glyma.02G195000.1.p 166 GPTYVNAKQYHGIIRRRQSRAKAVLENKM-IKRRKPYMHESRHLHATRRPRGCGGRF 221
                          699**************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-33163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.83164224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-21167189IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-25167221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-21198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAMQTVYLKE HEGLVHSSVG QLSSVTSAPW WSALGSQPVY GEYCGQMKSF SLEISNYVDQ  60
FGAGKQAARG VEQLLDKGHT TQFTIFPGIS SSDDCKMSGD AQNPQATLSL QSSLAEPHNR  120
FEIGVNQPMI CAKYPYMDQF YGLFSAYGPQ ISGRIMLPIN LTSDEGPTYV NAKQYHGIIR  180
RRQSRAKAVL ENKMIKRRKP YMHESRHLHA TRRPRGCGGR FLNTKSSTDG NGKNESEVIK  240
TSGRQFQSSA SQSSEVLQSE VGMLNSSKQT NRSSPNISGS EVTSMYSREG FDGFSVNPLG  300
SSVHSLADMI GSEHGIIRPT KWVAAVPGNC YNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16165225262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179198RRRQSRAKAVLENKMIKRRK
2179199RRRQSRAKAVLENKMIKRRKP
3180199RRQSRAKAVLENKMIKRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.36340.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G195000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575281.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_006575282.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_006575283.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_006575284.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_014623869.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_014623874.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_014623879.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLK7K9J70.0K7K9J7_SOYBN; Uncharacterized protein
STRINGGLYMA02G35190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-56nuclear factor Y, subunit A10